ggKbase home page

SCNpilot_BF_INOC_scaffold_168_85

Organism: SCNpilot_BF_INOC_Flavobacterium_39_30

near complete RP 52 / 55 MC: 2 BSCG 49 / 51 ASCG 15 / 38 MC: 1
Location: comp(95944..96504)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SMF1_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 186.0
  • Bit_score: 325
  • Evalue 4.20e-86
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ESU27888.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavo similarity UNIPROT
DB: UniProtKB
  • Identity: 84.4
  • Coverage: 186.0
  • Bit_score: 324
  • Evalue 1.30e-85
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 79.6
  • Coverage: 186.0
  • Bit_score: 305
  • Evalue 1.30e-80

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium saliperosum → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 561
TTGAAAGTAATCAACTTACATCAGGAAGAAAAGGAGCTTATTGCTTTGGCGGTCGAAAACAATCGGCATGCACAGCATAAGATATACTCCCAGCATGCTCCCAAAATGTTAAGTGTGTGCCGTCAGTACTTAAAAGATGTTCATCAGGCTGAAGATGTCATGATAACCGCTTTTATGAAAGTATTTACCGGCTTAAAGAATTTTGAGCACAAAGGCAGTTTTGAAGGATGGATCAGAAGAATCATGGTGAATGAGTGTATCTCACACATCAGGGTTCAGAAGCCAATTAAGTTTAGTGAAGAAGAAACCTTTTTAGAAGGGGGATTTAACAATATTGAAAGCCAGTTATCTGTAGAAGATATTCAGTTTTTAATAGATAATTTACCCGATGGCTACAGAATGGTATTCAACCTGTATGCTATTGAAGGGTATAAACACCAGGAAATAGGAAAAATGCTGGGCATAAGTGAAGGAACATCCAAGTCGCAATTATCCCACGCCAGAAAAATGTTGCAGGAACAAATTAACAGACAAAAAAATTATCAGAATGGAACCGAATAA
PROTEIN sequence
Length: 187
LKVINLHQEEKELIALAVENNRHAQHKIYSQHAPKMLSVCRQYLKDVHQAEDVMITAFMKVFTGLKNFEHKGSFEGWIRRIMVNECISHIRVQKPIKFSEEETFLEGGFNNIESQLSVEDIQFLIDNLPDGYRMVFNLYAIEGYKHQEIGKMLGISEGTSKSQLSHARKMLQEQINRQKNYQNGTE*