ggKbase | organisms

Consensus taxonomy: Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_BF_INOC_UNK

Properties

Avg. coverage: 18.37 Longest contig: 601.24 Kbp Bin length: 3.20 Mbp GC content: 64.69 %

Contigs count: 172 Features count: 3306 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 14 / 38 MC: 2

Displaying items 101-150 of 172 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_BF_INOC_scaffold_32218 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1259 bp	69.74	10.57	100.32
SCNpilot_BF_INOC_scaffold_59796 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1414 bp	56.86	65.50	46.46
SCNpilot_BF_INOC_scaffold_18179 Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)	2	2425 bp	65.48	15.11	97.48
SCNpilot_BF_INOC_scaffold_22329 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2404 bp	66.60	15.87	102.33
SCNpilot_BF_INOC_scaffold_17493 Species: BJP_08E140C01_Dechloromonas_61_78 (50%)	2	1896 bp	67.83	21.58	96.68
SCNpilot_BF_INOC_scaffold_37078 Species: R_Gallionellales_59_110 (50%)	2	1737 bp	63.15	5.49	56.82
SCNpilot_BF_INOC_scaffold_15656 Species: Thiobacillus denitrificans (50%)	2	2038 bp	55.99	9.61	87.73
SCNpilot_BF_INOC_scaffold_38698 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1064 bp	65.13	14.63	100.94
SCNpilot_BF_INOC_scaffold_23503 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1570 bp	63.82	46.52	90.57
SCNpilot_BF_INOC_scaffold_39172 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1050 bp	59.43	22.71	100.29
SCNpilot_BF_INOC_scaffold_50215 Species: Thiobacillus sp. SCN2 (50%)	2	1382 bp	58.54	50.13	85.96
SCNpilot_BF_INOC_scaffold_20741 Species: Sulfuricella denitrificans (50%)	2	1697 bp	63.23	10.35	83.97
SCNpilot_BF_INOC_scaffold_24890 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1514 bp	69.75	15.58	100.26
SCNpilot_BF_INOC_scaffold_11988 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2420 bp	64.92	8.61	88.88
SCNpilot_BF_INOC_scaffold_37102 Species: Alicycliphilus sp. B1 (50%)	2	1114 bp	58.44	6.98	73.52
SCNpilot_BF_INOC_scaffold_67479 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1237 bp	58.77	11.16	53.84
SCNpilot_BF_INOC_scaffold_9170 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	3449 bp	57.47	8.37	86.29
SCNpilot_BF_INOC_scaffold_40563 Species: GWE2_Gallionellales_58_10_curated (50%)	2	1008 bp	63.79	19.92	91.67
SCNpilot_BF_INOC_scaffold_34116 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1205 bp	60.83	4.37	100.33
SCNpilot_BF_INOC_scaffold_27437 Species: Thiobacillus denitrificans (100%)	2	1957 bp	66.58	9.88	84.47
SCNpilot_BF_INOC_scaffold_26752 Species: RIFOXYB12_FULL_Gallionellales_54_9_curated (50%)	2	3267 bp	61.19	48.09	99.63
SCNpilot_BF_INOC_scaffold_34355 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1198 bp	64.27	20.11	82.89
SCNpilot_BF_INOC_scaffold_46093 Species: Mesorhizobium alhagi (50%)	2	1707 bp	62.10	3.68	72.06
SCNpilot_BF_INOC_scaffold_43778 Species: R_Burkholderiales_57_36 (50%)	2	1647 bp	62.54	62.33	89.44
SCNpilot_BF_INOC_scaffold_38744 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1062 bp	60.73	17.73	75.42
SCNpilot_BF_INOC_scaffold_26770 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1440 bp	65.35	16.73	100.00
SCNpilot_BF_INOC_scaffold_19174 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1785 bp	52.94	4.22	71.26
SCNpilot_BF_INOC_scaffold_39681 Species: Thiobacillus denitrificans (100%)	2	1034 bp	72.15	17.48	100.10
SCNpilot_BF_INOC_scaffold_30466 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1314 bp	57.15	6.11	66.67
SCNpilot_BF_INOC_scaffold_42291 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1762 bp	66.29	18.09	89.22
SCNpilot_BF_INOC_scaffold_48602 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1214 bp	69.03	14.06	87.48
SCNpilot_BF_INOC_scaffold_14576 Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)	2	2131 bp	63.68	14.61	98.97
SCNpilot_BF_INOC_scaffold_30937 Species: Thiobacillus sp. SCN2 (50%)	2	1299 bp	64.67	4.64	55.66
SCNpilot_BF_INOC_scaffold_27948 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1397 bp	67.79	18.15	79.03
SCNpilot_BF_INOC_scaffold_47813 Species: Pseudoxanthomonas spadix (50%)	2	1750 bp	64.63	15.35	88.11
SCNpilot_BF_INOC_scaffold_21038 Species: Sulfuricella denitrificans (50%)	2	1681 bp	61.57	7.32	87.45
SCNpilot_BF_INOC_scaffold_25423 Species: marine sediment metagenome (50%)	2	1492 bp	53.08	7.57	51.88
SCNpilot_BF_INOC_scaffold_37176 Species: Thiobacillus denitrificans (50%)	2	1112 bp	65.29	27.76	99.28
SCNpilot_BF_INOC_scaffold_19675 Species: RIFOXYB12_FULL_Gallionellales_54_9_curated (50%)	2	2197 bp	63.36	24.45	99.41
SCNpilot_BF_INOC_scaffold_31428 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1283 bp	67.11	3.72	97.27
SCNpilot_BF_INOC_scaffold_40196 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1019 bp	64.18	31.28	100.10
SCNpilot_BF_INOC_scaffold_35590 Species: RBG_16_Betaproteobacteria_56_24_curated (50%)	2	1160 bp	63.28	5.84	98.28
SCNpilot_BF_INOC_scaffold_30756 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1305 bp	56.55	40.58	62.30
SCNpilot_BF_INOC_scaffold_33298 Species: Thiobacillus denitrificans (100%)	2	1229 bp	63.47	10.01	100.33
SCNpilot_BF_INOC_scaffold_35603 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1159 bp	65.06	17.54	98.62
SCNpilot_BF_INOC_scaffold_60545 Species: Sulfuricella sp. T08 (100%)	2	1223 bp	67.38	25.45	100.08
SCNpilot_BF_INOC_scaffold_23635 Species: Sideroxydans lithotrophicus (50%)	2	1564 bp	65.28	17.17	97.25
SCNpilot_BF_INOC_scaffold_52610 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1303 bp	58.56	27.55	95.55
SCNpilot_BF_INOC_scaffold_16496 Species: Hyphomicrobium denitrificans (50%)	2	1969 bp	67.29	58.89	99.34
SCNpilot_BF_INOC_scaffold_29402 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1347 bp	61.84	15.47	100.22

Displaying items 101-150 of 172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_BF_INOC_Thiobacillus_strain2_63_25) and add all its contigs / scaffolds to the organism you choose below

----- OR --------

Other organism

SCNpilot_BF_INOC_Thiobacillus_strain2_63_25

SCNpilot_bf_inoc_Hydrogenophilales_65_18

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help