ggKbase home page

SCNpilot_BF_INOC_scaffold_97_106

Organism: SCNpilot_BF_INOC_Bacteroidetes_37_82

near complete RP 52 / 55 BSCG 49 / 51 ASCG 14 / 38
Location: comp(139847..140932)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EDU0_RUNSL similarity UNIREF
DB: UNIREF100
  • Identity: 65.1
  • Coverage: 361.0
  • Bit_score: 472
  • Evalue 5.40e-130
Efflux pump periplasmic linker BepD {ECO:0000313|EMBL:KHJ36712.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedo similarity UNIPROT
DB: UniProtKB
  • Identity: 63.2
  • Coverage: 356.0
  • Bit_score: 480
  • Evalue 1.60e-132
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 65.1
  • Coverage: 361.0
  • Bit_score: 472
  • Evalue 1.50e-130

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter glucosidilyticus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1086
ATGAAAAGGACGTTTGTTCTTGTAGGATTAGCAGCACTTTTAGTGTTTTCAAGTTGCCACAATAAAACTCAAGAAAAAGAAGAAGCCGCCAAATTTTTAGTAACCAAACCGGTTCAAAAAGATACAACGGTTTACAAAGATTATGTATGCCAAATTAGAGCCATTAGCCACATCGAAGTTCGCTCTCAAGAAAAAGGTTATTTGCAAAATATTTATGTGGATGAAGGGCAACTTGTAAAGAAAGGGCAGTTGATGTTTCAAATTATGCCTGTGGTTTACGAAGCAGAAGTAGAGAAAGCAAAAGCCAATGTAAGCTTTGCTGAAATTGAATATCAAAATACTAAGAGTTTGGCAGATAGCAACATCGTTTCTAAAAACGAATTAGCATTATCAAAAGCACGATTGCAGAAGGAAAAAGCCGAGTTGGCACTTGCGCAGGCTCACTTATCATTTACTCAAATTCGCGCACCTTTCGATGGAATTATGGATAGATTTTACCAGCGATTAGGCAGTTTGGTTGAAGAAGGCGAATTGCTTACGACACTTTCAGATAACAGCAAAATGTGGGTCTATTTTAATGTGCCTGAAGCTGAATATTTAAGTTATGCAGCAGAAGAAAAGAAACAAGGCAAACCGAAAGTGAAATTGATAATGGCAAATAATGAACACTTTGACCATACCGGAATAGTGGAAACTATTGAAGCCGACTTTAATAATGAAACAGGAAACATTGCCTTTCGTGCTACATTTCCTAATCCTGATAAGTTGCTACGACATGGAGAAACAGGCACCATTCAAATGCCGATTTTACTTAAAAATGCTGTGTTGATTCCGCAAGAAGCAACCTTTGAAATTTTAGATAGAAGATATGTTTTTGTTATAGATAAAAATGGTGTGGTTGGTTTAAGAGAAGTAACCATTGAGCAAGAAATGCCGCATATATATGTAATATCAAAAGGATTAAGTACCGATGATATGGTGCTTGTTGATGGTATTCGTAAAGTGAAAAATGGCGATAAAATTAAAACAGAGTTTGAGCCGTTTGAGCAAGTATTAACTAAACTACAACAGTTACACGCTGAATAG
PROTEIN sequence
Length: 362
MKRTFVLVGLAALLVFSSCHNKTQEKEEAAKFLVTKPVQKDTTVYKDYVCQIRAISHIEVRSQEKGYLQNIYVDEGQLVKKGQLMFQIMPVVYEAEVEKAKANVSFAEIEYQNTKSLADSNIVSKNELALSKARLQKEKAELALAQAHLSFTQIRAPFDGIMDRFYQRLGSLVEEGELLTTLSDNSKMWVYFNVPEAEYLSYAAEEKKQGKPKVKLIMANNEHFDHTGIVETIEADFNNETGNIAFRATFPNPDKLLRHGETGTIQMPILLKNAVLIPQEATFEILDRRYVFVIDKNGVVGLREVTIEQEMPHIYVISKGLSTDDMVLVDGIRKVKNGDKIKTEFEPFEQVLTKLQQLHAE*