ggKbase home page

SCNpilot_BF_INOC_scaffold_480_27

Organism: SCNpilot_BF_INOC_Flavobacteriia_40_10

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 13 / 38 MC: 1
Location: comp(29035..29592)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X1E1_FLAB3 similarity UNIREF
DB: UNIREF100
  • Identity: 79.5
  • Coverage: 185.0
  • Bit_score: 300
  • Evalue 8.40e-79
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KIA89152.1}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobact similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 185.0
  • Bit_score: 304
  • Evalue 8.20e-80
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 79.5
  • Coverage: 185.0
  • Bit_score: 300
  • Evalue 2.40e-79

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chryseobacterium jeonii → Chryseobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 558
ATGGAAAAATCCGAACTTCTTTCCGTCATCACGCTTGCAAAACAAAAAGATCAGAAAGCGCAAACTAAGCTCATTAACGCATATTGGATCGATGTTTTCAGTTTTGTGATGAAGAAGGTTCAAAATGAGAATGTTGCCGACGAAATCACTGTTTCGGTGTTTTCCAAAGTACTTTCTAAGCTGGAAATGTATGATCCTAATTTTCAGTTCAAAACCTGGATTCTCACCATTGCTCAGAATACCGTTATCGACTATTGGCGAAAAAAATCTCGCGAAAATGAAGATTCCACAGACAATTTTGACGGATTCAAAAACCAATTTGCGCGTTCACCTGAAGAATTGTTGATTTCAGAAGAAGATCAGAAACAAATTCTGGCAGTAATTGCTAGTTTAGATTCCAATTATCAGGATATCATTAGGTTAAGATTTTTTGAAGAGAAAAGCATAAAAGAAATTGCAGAAGAACTACAACTCACCGTTGCCAATACCAAAGTACGCATTATGCGTGCCAAGAAGGTGCTTGCGCAGTTGCTGAAAGCCAATGAATTCAACGATTAA
PROTEIN sequence
Length: 186
MEKSELLSVITLAKQKDQKAQTKLINAYWIDVFSFVMKKVQNENVADEITVSVFSKVLSKLEMYDPNFQFKTWILTIAQNTVIDYWRKKSRENEDSTDNFDGFKNQFARSPEELLISEEDQKQILAVIASLDSNYQDIIRLRFFEEKSIKEIAEELQLTVANTKVRIMRAKKVLAQLLKANEFND*