ggKbase home page

SCNpilot_BF_INOC_scaffold_5560_3

Organism: SCNpilot_BF_INOC_Pseudomonadales_partialdouble_39_4

near complete RP 49 / 55 MC: 9 BSCG 43 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: 1140..1694

Top 3 Functional Annotations

Value Algorithm Source
TIGR02943 family RNA polymerase sigma-70 factor n=1 Tax=Acinetobacter sp. NIPH 236 RepID=N8R4P8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 98.9
  • Coverage: 184.0
  • Bit_score: 371
  • Evalue 6.60e-100
TIGR02943 family RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ENU28499.1}; TaxID=1217711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 184.0
  • Bit_score: 371
  • Evalue 9.30e-100
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 83.2
  • Coverage: 184.0
  • Bit_score: 327
  • Evalue 2.40e-87

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acinetobacter sp. NIPH 236 → Acinetobacter → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGGATTTAAGACAACAGATGCTGAAGTTTACTGTTTTACAACTGTCCTCATTTCAGCAAGCTGAAGATGTGGTTCAAGAAGCATTAGTGAGTGCTTTGCAACATCTAGACTCTTTTTCAGGAAGAGCGGCGTTTAAAACGTGGGTTTTTGCGATTTTAAAAAATAAGATCATTGATCTGATCCGACAAAAGTCTCGATTGGTGACTATGACTGAATTATTTGATGAACAAGATAATGAGTTGAGTATCGACGAGTTATTTGATGCCTCGGGGCACTGGCATAAATATCAAGCACCTAAAGCGTGGCAAAGCCCTGAAGAAATGATGGAACAGCAAGATTTTTGGATTGTTTTTGATGCTTGTTTGAATCATTTGCCTGCTAAATATGCGCAGGTGTTTATGTTACGAGAAGTAGTTGAACTCAGTTCTGATGAAATTTGCGAACGATTAGAGATTACTGTCTCAAATTTTAATGTCTTGATGTATAGAAGCCGAACTAGATTACGTGAATGTCTAGAAAATAAATGGTTACTTAAGGAGGATTGCTCATGCTAA
PROTEIN sequence
Length: 185
MDLRQQMLKFTVLQLSSFQQAEDVVQEALVSALQHLDSFSGRAAFKTWVFAILKNKIIDLIRQKSRLVTMTELFDEQDNELSIDELFDASGHWHKYQAPKAWQSPEEMMEQQDFWIVFDACLNHLPAKYAQVFMLREVVELSSDEICERLEITVSNFNVLMYRSRTRLRECLENKWLLKEDCSC*