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SCNpilot_BF_INOC_scaffold_1738_9

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: 4084..5031

Top 3 Functional Annotations

Value Algorithm Source
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 78.5
  • Coverage: 316.0
  • Bit_score: 505
  • Evalue 1.40e-140
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 78.5
  • Coverage: 316.0
  • Bit_score: 505
  • Evalue 7.00e-140
DNA-directed RNA polymerase subunit alpha n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8J0_ETHHY similarity UNIREF
DB: UNIREF100
  • Identity: 76.6
  • Coverage: 316.0
  • Bit_score: 490
  • Evalue 9.80e-136

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Taxonomy

[Clostridium] cellulosi → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 948
ATGATAGAAATTGAGAAGCCCAGAATTGAAGCTGAGGATTTATCGCCAGATGGTTCACACGGAAAATTCTGTATTGAACCTCTTGAGCGTGGTTACGGTACAACACTCGGAAACAGTTTAAGAAGAGTATTGCTCTCTTCTTTACCCGGTGTTGCTGTAACATCAATCAAGGTTGATGGTGTAGTACATGAATTTTCAACTCTACCTGGTGTCAAGGAAGATTTAACTGAAATAGTTCTGAATATCAAAGGGCTGACTGCCAAGCTGTATGGCGACGGTCCGAAGGTATGTTATATTGAGGCAGAAGGACCTTGTGAAGTAACCGGTGCTTCAGTAAAAGCAGACTCAGAAGTTGAAATTCTCAATCCTGATTTGCATATTGCATCCATTTCAGAATCAGGTAAGCTCTTTATGGAGCTGACCTTGGATAAAGGCCGTGGCTATGTTCCTGCAGAACGTAATAAGCAGGCACAAACCGTCATCGGAGTCATTCCTGTCGATTCAATCTACACACCTGTTCTCAAGGTCAATTATTACGTTGAAAACACCCGTGTCGGTCAGGTCACAGATTATGACAAGCTGACCATTGAGGTTTGGACCAACGGAACCATTACTGCAAAAGAAGCGGTTTCCTTGGGTGCTAAGGTTCTCAACGAGCATTTAAACCTGTTTATTGATCTTTCCGGTGATCTCAATAACTTTGATATCATGGTAGAAAAGGACGACAGCGGCAAGGAAAAGGTTCTGGAAATGACGATTGAAGAACTTGATTTATCTGTCAGAAGCTTTAACTGTCTGAAACGTGCTGGAATCAACACGGTAGAAGACTTAATCAATAAATCTGAAGAAGATATGATGAAGGTTAGAAATCTCGGACGTAAGTCCTTAGAAGAAGTGATTAATAAGCTTCAGTCTTTGGGATTTTTCCTTCGCAGCGAAGAAGATTGA
PROTEIN sequence
Length: 316
MIEIEKPRIEAEDLSPDGSHGKFCIEPLERGYGTTLGNSLRRVLLSSLPGVAVTSIKVDGVVHEFSTLPGVKEDLTEIVLNIKGLTAKLYGDGPKVCYIEAEGPCEVTGASVKADSEVEILNPDLHIASISESGKLFMELTLDKGRGYVPAERNKQAQTVIGVIPVDSIYTPVLKVNYYVENTRVGQVTDYDKLTIEVWTNGTITAKEAVSLGAKVLNEHLNLFIDLSGDLNNFDIMVEKDDSGKEKVLEMTIEELDLSVRSFNCLKRAGINTVEDLINKSEEDMMKVRNLGRKSLEEVINKLQSLGFFLRSEED*