ggKbase home page

SCNpilot_BF_INOC_scaffold_18920_4

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: 2790..3380

Top 3 Functional Annotations

Value Algorithm Source
two-component system, LytT family, response regulator LytT n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3709E similarity UNIREF
DB: UNIREF100
  • Identity: 33.1
  • Coverage: 163.0
  • Bit_score: 101
  • Evalue 1.40e-18
LytTr DNA-binding domain protein {ECO:0000313|EMBL:CCY72511.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eu similarity UNIPROT
DB: UniProtKB
  • Identity: 33.3
  • Coverage: 156.0
  • Bit_score: 99
  • Evalue 4.20e-18
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 33.5
  • Coverage: 164.0
  • Bit_score: 96
  • Evalue 9.40e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Eubacterium sp. CAG:115 → Eubacterium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 591
ATGACGNNNNNNNNNNNNNNNNCATTGAAAGATAAAGAACGGTATAATATAATAAGAAAAAGGGGTGGGAAAATGAACAAATACTTCATAGCCGTTTGTGATGATGAAGAACTTGCGCTGGCTCAAATTTCTGGAGTGGTTAAAAAAGAATTTGCAAGATGCGGGATAAATGCTGAAATAACTGTATTCAGTGAACCTAAGCTATTGCTTGAGTTAAACAGGACAAGCAATTTTGAAGTGATTTTTCTTGATATAGATATGCCTGATTTAGACGGAATAGAAACTGCAAGAATAATAAAAAATCAGAATCCAAAATCACTGATTATTTTTGTAACAGGCAAGGACGAGCTTGTATATAAATCTTTCGAAGTTCATCCATTTGGTTTTATACGAAAGCTTAAATTAAAAGAGGAGATTTCGAGAATTGTTGAGGACATAGTAAGAGAGCTGACAAGAAATGACTATATGCTGAATTTTAGAATAGAAGGAATCCATTATAAGCTTTTTGCTGATGAAATTATATACATAGAAAGTAAGGGTAACTATATTATTATAAAAGCAATAGATGGATTAGAACAAAAAAGAAATTGA
PROTEIN sequence
Length: 197
MTXXXXXXLKDKERYNIIRKRGGKMNKYFIAVCDDEELALAQISGVVKKEFARCGINAEITVFSEPKLLLELNRTSNFEVIFLDIDMPDLDGIETARIIKNQNPKSLIIFVTGKDELVYKSFEVHPFGFIRKLKLKEEISRIVEDIVRELTRNDYMLNFRIEGIHYKLFADEIIYIESKGNYIIIKAIDGLEQKRN*