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SCNpilot_bf_inoc_scaffold_328_curated

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_328_curated_1
Bacteroides intestinalis CAG:315, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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99..413
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Bacteroides intestinalis CAG:315 RepID=R7DQ40_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD92153.1}; TaxID=1263048 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:315.;"
DNA polymerase beta domain-containing protein region
SCNpilot_bf_inoc_scaffold_328_curated_2
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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612..2288
DNA (1677bp) protein (559aa)
TrkA C-terminal domain protein n=1 Tax=Bacteroides fragilis 3_1_12 RepID=E4W059_BACFG
TrkA C-terminal domain protein {ECO:0000313|EMBL:EFR55170.1}; TaxID=457424 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis 3_1_12.;"
hypothetical protein; K07085 putative transport protein rbh
SCNpilot_bf_inoc_scaffold_328_curated_3
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2332..4083
DNA (1752bp) protein (584aa)
Cl-channel voltage-gated family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Y8_PALPW
cL-channel voltage-gated family protein; K03281 chloride channel protein, CIC family
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_328_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4109..4687
DNA (579bp) protein (193aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T733_PALPW
nicotinamide mononucleotide transporter pnuc; K03811 nicotinamide mononucleotide transporter
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:ADQ80527.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_328_curated_5
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4791..5879
DNA (1089bp) protein (363aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:CEA16207.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CEA16207.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000380235F
hypothetical protein
SCNpilot_bf_inoc_scaffold_328_curated_6
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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5876..6853
DNA (978bp) protein (326aa)
Transketolase central region id=1884906 bin=GWD2_Bacteroidales_45_23 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_328_curated_7
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6991..8232
DNA (1242bp) protein (414aa)
Uncharacterized protein {ECO:0000313|EMBL:CEA16205.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
Catalytic domain of component of various dehydrogenase complexes id=1884904 bin=GWD2_Bacteroidales_45_23 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_bf_inoc_scaffold_328_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8243..9643)
DNA (1401bp) protein (467aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1Z9_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78743.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_328_curated_9
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9893..10648
DNA (756bp) protein (252aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018107}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018107};; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
dihydrodipicolinate reductase n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034BDE84
SCNpilot_bf_inoc_scaffold_328_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10645..11283
DNA (639bp) protein (213aa)
Putative metallo-beta-lactamase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T297_PALPW
metallO-beta-lactamase
Putative metallo-beta-lactamase {ECO:0000313|EMBL:ADQ78841.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_328_curated_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11484..12059)
DNA (576bp) protein (192aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 173
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T296_PALPW
SCNpilot_bf_inoc_scaffold_328_curated_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12172..13395
DNA (1224bp) protein (408aa)
peptidase t (EC:3.4.11.4); K01258 tripeptide aminopeptidase [EC:3.4.11.4]
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Peptidase T n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T227_PALPW
SCNpilot_bf_inoc_scaffold_328_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13407..14474
DNA (1068bp) protein (356aa)
aminomethyltransferase (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aminomethyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T226_PALPW
SCNpilot_bf_inoc_scaffold_328_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14476..16776)
DNA (2301bp) protein (767aa)
Allosteric NADP-dependent malic enzyme {ECO:0000313|EMBL:ADQ78769.1}; EC=1.1.1.40 {ECO:0000313|EMBL:ADQ78769.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
allosteric nADP-dependent malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Allosteric NADP-dependent malic enzyme n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T225_PALPW
SCNpilot_bf_inoc_scaffold_328_curated_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16874..17968
DNA (1095bp) protein (365aa)
DNA replication and repair protein RecF n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T223_PALPW
DNA replication and repair protein recf; K03629 DNA replication and repair protein RecF
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_328_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18250..20790
DNA (2541bp) protein (847aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:ADQ78766.1}; EC=1.17.4.1 {ECO:0000313|EMBL:ADQ78766.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T222_PALPW
SCNpilot_bf_inoc_scaffold_328_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20893..21582)
DNA (690bp) protein (230aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T844_PALPW
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADQ80888.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_328_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21996..23756)
DNA (1761bp) protein (587aa)
Hydrogenase, Fe-only id=1903511 bin=GWD2_Bacteroidales_45_23 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_328_curated_19
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23783..26926)
DNA (3144bp) protein (1048aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit id=2554029 bin=GWC2_Bacteroidetes_46_850 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_328_curated_20
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26923..27432)
DNA (510bp) protein (170aa)
NADH:ubiquinone oxidoreductase 24 kD subunit id=2554027 bin=GWC2_Bacteroidetes_46_850 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_328_curated_21
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27837..29753)
DNA (1917bp) protein (639aa)
Putative uncharacterized protein id=4111663 bin=GWA2_Bacteroidetes_40_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
SCNpilot_bf_inoc_scaffold_328_curated_22
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(29759..30205)
DNA (447bp) protein (149aa)
Secreted protein with Por secretion system C-terminal sorting domain n=1 Tax=Psychroflexus torquis (strain ATCC 700755 / ACAM 623) RepID=K4ILA2_PSYTT
secreted protein with Por secretion system C-terminal sorting domain
Secreted protein with Por secretion system C-terminal sorting domain {ECO:0000313|EMBL:AFU70553.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
SCNpilot_bf_inoc_scaffold_328_curated_23
unknown

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comp(30862..31041)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_328_curated_24
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31160..31576)
DNA (417bp) protein (139aa)
hypothetical protein ANA_C20489 id=1863101 bin=GWD2_Bacteroidetes_40_43 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_bf_inoc_scaffold_328_curated_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31910..33541)
DNA (1632bp) protein (544aa)
60 kDa chaperonin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3P8_PALPW
chaperonin groel; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_328_curated_26
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33589..33858)
DNA (270bp) protein (90aa)
10 kDa chaperonin n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JE05_9PORP
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
groES; co-chaperonin GroES; K04078 chaperonin GroES
SCNpilot_bf_inoc_scaffold_328_curated_27
unknown

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comp(33889..34005)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_328_curated_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34033..35157)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WR46_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13813.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
mannosyltransferase
SCNpilot_bf_inoc_scaffold_328_curated_29
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35160..36755)
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8XTY1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY53532.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_328_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36944..38290
DNA (1347bp) protein (449aa)
MATE efflux family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0F1_PALPW
mate efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADQ78310.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 1-30 of 76 in total

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