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SCNpilot_bf_inoc_scaffold_638_curated

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_638_curated_31
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27111..27539)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5U1_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80106.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_32
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27551..28174)
DNA (624bp) protein (208aa)
Conjugative transposon TraK protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZE2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CDT29825.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_638_curated_33
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28190..29185)
DNA (996bp) protein (332aa)
TraJ family protein conjugative transposon n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7H7_PEDSD
TraJ family protein conjugative transposon
TraJ family protein conjugative transposon {ECO:0000313|EMBL:ADY52237.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_638_curated_34
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29189..29821)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5U4_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80109.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_35
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29843..32350)
DNA (2508bp) protein (836aa)
TraG family conjugation system ATPase n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZD9_9FLAO
Type IV secretory pathway VirB4 components-like protein {ECO:0000313|EMBL:ADY52235.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
type IV secretory pathway VirB4 components-like protein
SCNpilot_bf_inoc_scaffold_638_curated_36
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32347..32679)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7H4_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52234.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_638_curated_37
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32657..33499)
DNA (843bp) protein (281aa)
D12 class N6 adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72]
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MMQ0_9SPHI
D12 class N6 adenine-specific DNA methyltransferase {ECO:0000313|EMBL:EFK36112.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
SCNpilot_bf_inoc_scaffold_638_curated_38
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33515..33820)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5U7_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80112.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_39
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34075..34389)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RTF1_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ15965.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_bf_inoc_scaffold_638_curated_40
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34470..35108)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5V0_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80115.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_41
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35111..35398)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5V1_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80116.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_42
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35410..35832)
DNA (423bp) protein (141aa)
Conjugal transfer protein TraB n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MMQ5_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52225.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_638_curated_43
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35837..36604)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZC8_9FLAO
Chromosome partitioning ATPase {ECO:0000313|EMBL:CDT21057.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
chromosome partitioning ATPase
SCNpilot_bf_inoc_scaffold_638_curated_44
unknown

Not on your lists

comp(36870..37046)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_45
unknown

Not on your lists

37103..37198
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_46
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

37277..37714
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FW49_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA07278.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_638_curated_47
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37711..39018
DNA (1308bp) protein (436aa)
Relaxase n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NPU5_9SPHI
Relaxase/mobilization nuclease
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ADZ80120.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_48
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39170..41173
DNA (2004bp) protein (668aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5V6_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:CDS98960.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_638_curated_49
unknown

Not on your lists

41418..41561
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_50
Odoribacter sp. CAG:788, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41561..41998
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Porphyromonas macacae RepID=UPI00035D6845
Uncharacterized protein {ECO:0000313|EMBL:CCZ09886.1}; TaxID=1262909 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter sp. CAG:788.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_638_curated_51
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42194..43489
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000362483C
Cation efflux system protein {ECO:0000313|EMBL:GAO27669.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
cation efflux system protein
SCNpilot_bf_inoc_scaffold_638_curated_52
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43547..46645
DNA (3099bp) protein (1033aa)
multidrug transporter AcrB n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000382BD86
Cobalt-zinc-cadmium resistance protein CzcA {ECO:0000313|EMBL:GAK37306.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
cation efflux system protein
SCNpilot_bf_inoc_scaffold_638_curated_53
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

46620..47831
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F285D
Uncharacterized protein {ECO:0000313|EMBL:GAK37305.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_638_curated_54
unknown

Not on your lists

47843..48121
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_55
unknown

Not on your lists

48118..48288
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_56
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

48313..50358
DNA (2046bp) protein (682aa)
Cadmium-exporting ATPase {ECO:0000313|EMBL:EEI92285.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EEI92285.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
ATPase P (EC:3.6.3.5); K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Cadmium-exporting ATPase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXS3_9SPHI
SCNpilot_bf_inoc_scaffold_638_curated_57
unknown

Not on your lists

50401..50640
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_638_curated_58
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

50760..51587
DNA (828bp) protein (276aa)
Tetracycline regulation of excision, RteC n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C771_SPHS2
tetracycline regulation of excision RteC
Tetracycline regulation of excision, RteC {ECO:0000313|EMBL:ADZ80146.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_bf_inoc_scaffold_638_curated_59
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(51852..52184)
DNA (333bp) protein (111aa)
DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase III n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S6U2_PEDSD
DNA topoisomerase III {ECO:0000313|EMBL:ADY52202.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
Displaying items 31-59 of 59 in total

View Taxonomy