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SCNpilot_bf_inoc_scaffold_253_curated_11

Organism: scnpilot_dereplicated_Bacteroidia_2

near complete RP 52 / 55 MC: 5 BSCG 50 / 51 MC: 5 ASCG 12 / 38 MC: 4
Location: 15524..16090

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=3 Tax=Parabacteroides RepID=K5ZW22_9PORP similarity UNIREF
DB: UNIREF100
  • Identity: 45.1
  • Coverage: 184.0
  • Bit_score: 156
  • Evalue 3.40e-35
Uncharacterized protein {ECO:0000313|EMBL:CCX78057.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.1
  • Coverage: 184.0
  • Bit_score: 156
  • Evalue 4.80e-35
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 175.0
  • Bit_score: 152
  • Evalue 1.60e-34

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Taxonomy

Parabacteroides johnsonii CAG:246 → Parabacteroides → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 567
ATGGATGGAGAAAGAGAATCTAATGTAGAGCTTGATAGGATTTGGAGGAGATTTCTTGCCGGTGATAATGAATCTTTTGACCTGCTATATAGCCAGTATGTACAGACTCTTTTTATGTACGGATTACAACTCACTGCCGACAAAGAGTTACTTAAGGATTGTATTCAAGATGTATTTGTTAAGTTGTATTGTGCACGAACACACTTATGTCATGTGTCTAATATAGGGTCGTATCTGCGTGTAGCATTAAAGAACAGGATGATAAATTCTTTGAACCGGGAAAAATTTTATCTTAAATCTATGGATGTTTCGGAGGTGACATTTGATGAAGGTATGGTTGAACCTGATATCTTATATAAAGAAGAGGAATTACAGAAACAGAATAAAATAGATGCAATGATGAATCTTCTTACCCCTCAACAGAGGAAAGTCATTCTTTACCGGTATGTAGAAGGCTTAAGTTTGGAAGATATAAGCCTGCAAACGGGAGTTAAGTACCAGTCCATACAAAATACATTGCAACGTGCGATAAAAAAAATAAAAAAACACTATTTTCCTAAAAAGTGA
PROTEIN sequence
Length: 189
MDGERESNVELDRIWRRFLAGDNESFDLLYSQYVQTLFMYGLQLTADKELLKDCIQDVFVKLYCARTHLCHVSNIGSYLRVALKNRMINSLNREKFYLKSMDVSEVTFDEGMVEPDILYKEEELQKQNKIDAMMNLLTPQQRKVILYRYVEGLSLEDISLQTGVKYQSIQNTLQRAIKKIKKHYFPKK*