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SCNpilot_bf_inoc_scaffold_1907_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1907_curated_1

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1..1551
DNA (1551bp) protein (517aa)
Putative dissimilatory reductase NirS n=1 Tax=uncultured bacterium 6254 RepID=B8R975_9BACT
Putative dissimilatory reductase NirS {ECO:0000313|EMBL:ACF98231.1}; TaxID=548903 species="Bacteria; environmental samples.;" source="uncultured bacterium 6254.;"
nirN; heme d1 biosynthesis protein NirN
SCNpilot_bf_inoc_scaffold_1907_curated_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1576..2283)
DNA (708bp) protein (236aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7Y0_LEPCP
Crp/FNR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_bf_inoc_scaffold_1907_curated_3
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2333..4300)
DNA (1968bp) protein (656aa)
Nitric oxide reductase activation protein NorD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HM22_RUBGI
norD; nitric oxide reductase activation protein NorD; K02448 nitric oxide reductase NorD protein
Nitric oxide reductase activation protein NorD {ECO:0000313|EMBL:BAL94059.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_bf_inoc_scaffold_1907_curated_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4340..5107)
DNA (768bp) protein (256aa)
ATPase associated with various cellular activities AAA_5 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7Z3_LEPCP
ATPase; K04748 nitric oxide reductase NorQ protein
ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ACB33735.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_bf_inoc_scaffold_1907_curated_5
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5231..6688)
DNA (1458bp) protein (486aa)
norB; cytochrome b subunit of NO reductase, NorB (EC:1.7.2.5); K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
nitric oxide reductase n=1 Tax=Acidovorax radicis RepID=UPI00023754DE
Nitric oxide reductase {ECO:0000313|EMBL:KJA12064.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_bf_inoc_scaffold_1907_curated_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6707..7159)
DNA (453bp) protein (151aa)
Putative nitric-oxide reductase subunit C n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRU1_9BURK
norC; cytochrome c subunit of NO reductase, NorC; K02305 nitric oxide reductase subunit C
Putative nitric-oxide reductase subunit C {ECO:0000313|EMBL:EGJ11059.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
SCNpilot_bf_inoc_scaffold_1907_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7464..9020)
DNA (1557bp) protein (519aa)
bifunctional protein PaaZ/MaoC/YdbN (EC:3.7.1.16 1.17.1.7)
Bifunctional protein PaaZ/MaoC/YdbN {ECO:0000313|EMBL:AGU48407.1}; EC=1.17.1.7 {ECO:0000313|EMBL:AGU48407.1};; EC=3.3.2.12 {ECO:0000313|EMBL:AGU48407.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
enoyl-CoA hydratase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003761BF6
SCNpilot_bf_inoc_scaffold_1907_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9171..9914)
DNA (744bp) protein (248aa)
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00036D2DCF
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33317.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_1907_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9911..11578)
DNA (1668bp) protein (556aa)
metal-dependent hydrolase n=1 Tax=Curvibacter lanceolatus RepID=UPI00037FD395
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL70204.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_1907_curated_10
unknown

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comp(11575..11712)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1907_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11709..12737)
DNA (1029bp) protein (343aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00035D8072
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL70203.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_1907_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12827..13981)
DNA (1155bp) protein (385aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F0FAD
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACS17881.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_1907_curated_13
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14299..15282)
DNA (984bp) protein (328aa)
membrane protein; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Cobalamin biosynthesis protein CobD n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1P9_RAMTT
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1907_curated_14
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15327..16064)
DNA (738bp) protein (246aa)
NUDIX hydrolase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNP5_9BURK
NUDIX hydrolase
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1907_curated_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16167..16550)
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=2 Tax=Comamonas testosteroni RepID=D0J0W6_COMT2
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_bf_inoc_scaffold_1907_curated_16
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16669..17460)
DNA (792bp) protein (264aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1EAP8_9BURK
trmD; tRNA (guanine-N(1)-)-methyltransferase
SCNpilot_bf_inoc_scaffold_1907_curated_17
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17457..18443)
DNA (987bp) protein (329aa)
Disulfide bond chaperone n=1 Tax=Variovorax sp. CF313 RepID=J2TGW7_9BURK
Hsp33 protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_1907_curated_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18461..18985)
DNA (525bp) protein (175aa)
anhydrase n=1 Tax=Curvibacter lanceolatus RepID=UPI00035FDCE4
Uncharacterized protein {ECO:0000313|EMBL:EPD39469.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hexapeptide repeat-containing transferase
SCNpilot_bf_inoc_scaffold_1907_curated_19
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19033..19848
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XEA8_VARPD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_bf_inoc_scaffold_1907_curated_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19867..21066)
DNA (1200bp) protein (400aa)
AAA+ family ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRQ8_9BURK
AAA+ family ATPase {ECO:0000313|EMBL:EHR72838.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Mitochondrial chaperone bcs1, putative
SCNpilot_bf_inoc_scaffold_1907_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21225..27200
DNA (5976bp) protein (1992aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC56_ALIDK
alpha-2-macroglobulin domain-containing protein; K06894
Alpha-2-macroglobulin domain protein {ECO:0000313|EMBL:AEB83630.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_1907_curated_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(27282..28982)
DNA (1701bp) protein (567aa)
long-chain-fatty-acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Long-chain-fatty-acid--CoA ligase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1L4_RAMTT
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1907_curated_23
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(29205..29543)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EIK89669.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EIK89669.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
nitrogen regulatory protein P-II 1 n=1 Tax=Caldimonas manganoxidans RepID=UPI0003634023
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1
SCNpilot_bf_inoc_scaffold_1907_curated_24
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(29561..31192)
DNA (1632bp) protein (544aa)
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
Probable glutamine-dependent NAD(+) synthetase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YAC9_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1907_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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31195..32454
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWI0_ALIDB
hypothetical protein; K09919 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO22770.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1907_curated_26
unknown

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comp(32477..32794)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1907_curated_27
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(32860..34362)
DNA (1503bp) protein (501aa)
hypothetical protein; K13049 carboxypeptidase PM20D1 [EC:3.4.17.-] id=12550489 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein; K13049 carboxypeptidase PM20D1 [EC:3.4.17.-]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1907_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(34420..35832)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000362AEAB
HSR1-like GTP-binding protein
GTP-binding protein HSR1-related {ECO:0000313|EMBL:ACS19844.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_1907_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(35825..37255)
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037C6D92
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32185.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1907_curated_30
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(37666..38208)
DNA (543bp) protein (181aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
inorganic diphosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Polaromonas sp. CF318 RepID=J3CZC1_9BURK
Displaying items 1-30 of 32 in total

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