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SCNpilot_bf_inoc_scaffold_722_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_722_curated_1
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119..1147)
DNA (1029bp) protein (343aa)
ABC transporter periplasmic protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EF58_9BURK
ABC transporter periplasmic protein {ECO:0000313|EMBL:EKZ97970.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_722_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1269..2249)
DNA (981bp) protein (327aa)
Candidate extracytoplasmic binding receptor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y065_RAMTT
tctC; extracytoplasmic binding receptor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_bf_inoc_scaffold_722_curated_3
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2489..2779
DNA (291bp) protein (97aa)
DNA polymerase beta domain-containing protein n=2 Tax=Alcaligenes RepID=M5IY71_9BURK
DNA polymerase beta domain-containing protein {ECO:0000313|EMBL:EJC65079.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
nucleotidyl-transferase; K07075
SCNpilot_bf_inoc_scaffold_722_curated_4
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2776..3144
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0BG95_ALCFA
Uncharacterized protein {ECO:0000313|EMBL:EJC65080.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_722_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3410..3529)
DNA (120bp) protein (40aa)
CRISPR-associated helicase Cas3, protein {ECO:0000313|EMBL:GAO22374.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_722_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3677..7603)
DNA (3927bp) protein (1309aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyclip
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSK8_ALIDB
SCNpilot_bf_inoc_scaffold_722_curated_7
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7761..8582
DNA (822bp) protein (274aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
methionine aminopeptidase, type i; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR71_9BURK
SCNpilot_bf_inoc_scaffold_722_curated_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8599..11274
DNA (2676bp) protein (892aa)
PII uridylyl-transferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002E69B48
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_722_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11448..12284
DNA (837bp) protein (279aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372B49A
ABC-type amino acid transport/signal transduction system, periplasmic component/domain {ECO:0000313|EMBL:GAD23117.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
family 3 extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_722_curated_10
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12458..13111
DNA (654bp) protein (218aa)
Polar amino acid ABC transporter permease n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YUP7_9RHOO
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:ENO75945.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
SCNpilot_bf_inoc_scaffold_722_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13101..13886
DNA (786bp) protein (262aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEB83229.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEB83229.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Phosphonate-transporting ATPase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7S6_ALIDK
SCNpilot_bf_inoc_scaffold_722_curated_12
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13905..18173)
DNA (4269bp) protein (1423aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
ATP-dependent helicase HrpA n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q2B5_ACIAP
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_722_curated_13
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18268..18693
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47A33_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ48298.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_bf_inoc_scaffold_722_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19143..20261
DNA (1119bp) protein (373aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI6_ALIDB
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV00884.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_722_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20394..21320
DNA (927bp) protein (309aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI7_ALIDB
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
ABC transporter permease {ECO:0000313|EMBL:GAO24468.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_722_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21320..22585
DNA (1266bp) protein (422aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI8_ALIDB
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADV00886.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_722_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22585..23352
DNA (768bp) protein (256aa)
Sulfate-transporting ATPase {ECO:0000313|EMBL:AEB83686.1}; EC=3.6.3.25 {ECO:0000313|EMBL:AEB83686.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI9_ALIDB
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_722_curated_18
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23352..24062
DNA (711bp) protein (237aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYJ0_ALIDB
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXU81931.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_722_curated_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24141..24815)
DNA (675bp) protein (225aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
Molybdenum cofactor cytidylyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ13_ALIDB
4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000313|EMBL:GAO23622.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_722_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24866..25918)
DNA (1053bp) protein (351aa)
XshC-Cox1-family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7P2_ALIDK
XshC-Cox1 family protein; K07402 xanthine dehydrogenase accessory factor
XshC-Cox1-family protein {ECO:0000313|EMBL:AEB86639.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_722_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25948..26508)
DNA (561bp) protein (187aa)
Carbon monoxide dehydrogenase subunit G n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD4_ALIDB
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:AEB84599.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_722_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26527..27762)
DNA (1236bp) protein (412aa)
VWA containing CoxE family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD3_ALIDB
VWA containing CoxE family protein; K07161
VWA containing CoxE family protein {ECO:0000313|EMBL:AEB84598.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_722_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27759..28655)
DNA (897bp) protein (299aa)
Putative ATPase n=1 Tax=Variovorax paradoxus B4 RepID=T1X9F5_VARPD
putative ATPase
Putative ATPase {ECO:0000313|EMBL:AGU48800.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_722_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28808..29602)
DNA (795bp) protein (265aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Carbon-monoxide dehydrogenase (Acceptor) {ECO:0000313|EMBL:ADU99717.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ADU99717.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Carbon-monoxide dehydrogenase (Acceptor) n=2 Tax=Alicycliphilus denitrificans RepID=E8TYD1_ALIDB
SCNpilot_bf_inoc_scaffold_722_curated_25
unknown

Not on your lists

31782..32000
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_722_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32114..32581)
DNA (468bp) protein (156aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2); K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Carbon-monoxide dehydrogenase (Acceptor) {ECO:0000313|EMBL:AEB84594.1}; EC=1.2.99.2 {ECO:0000313|EMBL:AEB84594.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
(2Fe-2S)-binding domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYC9_ALIDB
SCNpilot_bf_inoc_scaffold_722_curated_27
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32757..33902
DNA (1146bp) protein (382aa)
Signal transduction protein : sensor, GAF domain transcriptional regulator, Fis family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3E9_RAMTT
signal transduction protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_722_curated_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34045..34494)
DNA (450bp) protein (150aa)
Integrase, catalytic region n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLJ8_VEREI
integrase catalytic subunit; K07497 putative transposase
Integrase, catalytic region {ECO:0000313|EMBL:ABM58505.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_722_curated_29
unknown

Not on your lists

comp(34491..34943)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_722_curated_30
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35020..35505)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E5443C
Uncharacterized protein {ECO:0000313|EMBL:EKS37662.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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