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SCNpilot_bf_inoc_scaffold_859_curated

Search features with annotation key words

Displaying items 31-60 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_859_curated_31
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27953..28141)
DNA (189bp) protein (63aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
NADH-quinone oxidoreductase subunit H n=2 Tax=Alicycliphilus denitrificans RepID=E8U1L4_ALIDB
SCNpilot_bf_inoc_scaffold_859_curated_32
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28138..30252)
DNA (2115bp) protein (705aa)
NADH dehydrogenase subunit G {ECO:0000313|EMBL:KGH32269.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KGH32269.1};; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
NADH-quinone oxidoreductase subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase, chain G n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WRU3_COMTE
SCNpilot_bf_inoc_scaffold_859_curated_33
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30276..31622)
DNA (1347bp) protein (449aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:AEB86334.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AEB86334.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
NADH dehydrogenase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D4CD
SCNpilot_bf_inoc_scaffold_859_curated_34
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31626..32144)
DNA (519bp) protein (173aa)
NADH-quinone oxidoreductase subunit E (EC:1.6.99.5); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-quinone oxidoreductase, E subunit n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y831_LEPCP
NADH:ubiquinone oxidoreductase 24 kD subunit {ECO:0000313|EMBL:BAO80602.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_bf_inoc_scaffold_859_curated_35
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32141..33394)
DNA (1254bp) protein (418aa)
NADH dehydrogenase subunit D (EC:1.6.99.5) id=12553905 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
NADH dehydrogenase subunit D (EC:1.6.99.5)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_859_curated_36
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33400..34008)
DNA (609bp) protein (203aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit C n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHD6_9BURK
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_859_curated_37
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34011..34196)
DNA (186bp) protein (62aa)
NADH dehydrogenase subunit b (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
NADH dehydrogenase subunit B n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002DED790
SCNpilot_bf_inoc_scaffold_859_curated_38
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34563..34922)
DNA (360bp) protein (120aa)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Acidovorax radicis RepID=UPI000237710A
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_859_curated_39
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35194..35634)
DNA (441bp) protein (147aa)
Candidate preprotein translocase, subunit SecG n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3T8_RAMTT
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
Candidate preprotein translocase, subunit SecG {ECO:0000313|EMBL:AEG93745.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_859_curated_40
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35675..36427)
DNA (753bp) protein (251aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036054E8
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_859_curated_41
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36424..37443)
DNA (1020bp) protein (340aa)
NADPH quinone oxidoreductase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F1DE91
NAD(P)h quinone oxidoreductase
NAD(P)H quinone oxidoreductase, PIG3 family {ECO:0000313|EMBL:ADU38200.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_bf_inoc_scaffold_859_curated_42
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37713..39758)
DNA (2046bp) protein (682aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=PNP_ACISJ rbh
SCNpilot_bf_inoc_scaffold_859_curated_43
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(39974..40240)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 id=1274305 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_bf_inoc_scaffold_859_curated_44
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40362..40922)
DNA (561bp) protein (187aa)
Rhodanese-like protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6ZCV5_9RHOO
rhodanese-like protein
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_bf_inoc_scaffold_859_curated_45
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41025..41942)
DNA (918bp) protein (306aa)
speE; spermidine synthase (EC:2.5.1.16); K00797 spermidine synthase [EC:2.5.1.16] rbh
Polyamine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198}; Short=PAPT {ECO:0000255|HAMAP-Rule:MF_00198};; Spermidine synthase {ECO:0000255|HAMAP-Rule:MF_00198}; Short=SPDS {ECO:0000255|HAMAP-Rule:MF_00198};; Short=SPDSY {ECO:0000255|HAMAP-Rule:MF_00198};; EC=2.5.1.16 {ECO:0000255|HAMAP-Rule:MF_00198};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="N
Spermidine synthase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=SPEE_NITEU rbh
SCNpilot_bf_inoc_scaffold_859_curated_46
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41939..42382)
DNA (444bp) protein (148aa)
hypothetical protein (EC:4.1.1.50); K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50]
Adenosylmethionine decarboxylase {ECO:0000256|SAAS:SAAS00093036}; EC=4.1.1.50 {ECO:0000256|SAAS:SAAS00093036, ECO:0000313|EMBL:CAD84259.1};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
DUF206 n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82XD3_NITEU
SCNpilot_bf_inoc_scaffold_859_curated_47
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42684..43850)
DNA (1167bp) protein (389aa)
aspartate aminotransferase (EC:2.6.1.-)
aspartate aminotransferase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000300036C
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_859_curated_48
unknown

Not on your lists

43936..44205
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_859_curated_49
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44290..45777)
DNA (1488bp) protein (496aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037FFBD1
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain {ECO:0000313|EMBL:GAD23725.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_859_curated_50
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45923..47269)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
histidine kinase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395C86B
SCNpilot_bf_inoc_scaffold_859_curated_51
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47511..48191)
DNA (681bp) protein (227aa)
transcriptional regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI0003959F9D
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_859_curated_52
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48345..51266
DNA (2922bp) protein (974aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00035EF2B1
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_859_curated_53
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51268..51660
DNA (393bp) protein (131aa)
pH adaptation potassium efflux protein PhaC n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FZG2_SORC5
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
pH adaptation potassium efflux protein PhaC {ECO:0000313|EMBL:CAN98748.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_bf_inoc_scaffold_859_curated_54
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51657..53366
DNA (1710bp) protein (570aa)
Monovalent cation/H+ antiporter subunit D n=1 Tax=Acidovorax sp. KKS102 RepID=K0IAY8_9BURK
monovalent cation/H+ antiporter subunit D
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_859_curated_55
Pseudomonas sp. CFII64, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53363..53854
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000382AC1A
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:EPJ84315.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
phaE; putative K+/H+ antiporter subunit E PhaE; K05562 multicomponent K+:H+ antiporter subunit E
SCNpilot_bf_inoc_scaffold_859_curated_56
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53851..54129
DNA (279bp) protein (93aa)
K(+)/H(+) antiporter, subunit F n=3 Tax=Pseudomonas RepID=F2K7R2_PSEBN
Na(+) H(+) antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Monovalent cation/proton antiporter, MnhF/PhaF subunit {ECO:0000313|EMBL:EIK66961.1}; TaxID=1038923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q8r1-96.;"
SCNpilot_bf_inoc_scaffold_859_curated_57
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54126..54497
DNA (372bp) protein (124aa)
cation:proton antiporter n=1 Tax=Methyloversatilis universalis RepID=UPI00035E98B1
pH adaptation potassium efflux protein PhaG {ECO:0000313|EMBL:EGK73077.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
phaG; pH adaptation potassium efflux protein PhaG; K05564 multicomponent K+:H+ antiporter subunit G
SCNpilot_bf_inoc_scaffold_859_curated_58
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54626..56269)
DNA (1644bp) protein (548aa)
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8B4_ACIDE
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EER59283.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
AMP-dependent synthetase and ligase
SCNpilot_bf_inoc_scaffold_859_curated_59
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56434..58248
DNA (1815bp) protein (605aa)
dnaG; DNA primase protein DnaG; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
DNA primase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1Y4_RAMTT
SCNpilot_bf_inoc_scaffold_859_curated_60
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58596..60914
DNA (2319bp) protein (773aa)
RNA polymerase sigma factor RpoD n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWS2_9BURK
RpoD family RNA polymerase sigma factor
Tax=GWA2_Curvibacter_64_110_curated
Displaying items 31-60 of 68 in total

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