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SCNpilot_bf_inoc_scaffold_5315_curated_6

Organism: scnpilot_dereplicated_Burkholderiales_2

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(5878..6171)

Top 3 Functional Annotations

Value Algorithm Source
transcription regulator (helix turn helix motif) XRE family id=12552217 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 85.7
  • Coverage: 98.0
  • Bit_score: 161
  • Evalue 4.20e-37
helix-turn-helix domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 85.6
  • Coverage: 97.0
  • Bit_score: 160
  • Evalue 2.30e-37
Helix-turn-helix domain protein {ECO:0000313|EMBL:ABM43075.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.6
  • Coverage: 97.0
  • Bit_score: 160
  • Evalue 1.00e-36

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Taxonomy

Acidovorax sp. JS42 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 294
TTGGCAGCGCAGCACACATTGTCGGAGGCCTTGAAGACCATCCGGAAGGCGCGGGGTTTGAGCCAGGAAGCGTTCTCCGACGTCTCCAGCCGCACCTACATGAGTACGCTGGAGCGCAACCTCAAAAGCCCCACCTTGAACAAGCTGGCCGAGCTGTGCGAGGTGATGGAAGTGCATCCGCTCACGCTGCTGACGCTGGCCTACGCCGGCAGCAACACACGCAACGCTGACCAGCTTCTGATGCTAGTACGGCAGGAACTGGAAGCTGTAATCGGCCAAGGCAGCACACCGTAA
PROTEIN sequence
Length: 98
LAAQHTLSEALKTIRKARGLSQEAFSDVSSRTYMSTLERNLKSPTLNKLAELCEVMEVHPLTLLTLAYAGSNTRNADQLLMLVRQELEAVIGQGSTP*