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SCNpilot_bf_inoc_scaffold_127_curated

Search features with annotation key words

Displaying items 31-60 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_127_curated_31
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23325..23903)
DNA (579bp) protein (193aa)
DNA binding protein, excisionase family n=2 Tax=Clostridium botulinum RepID=B1IG46_CLOBK
excisionase
DNA binding protein, excisionase family {ECO:0000313|EMBL:ACA46517.1}; TaxID=498213 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Okra / Type B1).;"
SCNpilot_bf_inoc_scaffold_127_curated_32
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23931..24287)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000379F663
Cytoplasmic protein {ECO:0000313|EMBL:AIQ57559.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_127_curated_33
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(24457..25233)
DNA (777bp) protein (259aa)
Putative uncharacterized protein id=1779007 bin=GWB2_Clostridiales_37_7 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Anaerolineales_40_8
SCNpilot_bf_inoc_scaffold_127_curated_34
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(25365..25754)
DNA (390bp) protein (130aa)
Putative uncharacterized protein id=1867193 bin=GWB2_Clostridiales_37_7 species=Clostridium kluyveri genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_127_curated_35
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(25764..26591)
DNA (828bp) protein (276aa)
Prolipoprotein diacylglyceryl transferase id=1779002 bin=GWB2_Clostridiales_37_7 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
prolipoprotein diacylglyceryl transferase
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_127_curated_36
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26745..28091)
DNA (1347bp) protein (449aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGT2_ALKOO
Transcriptional regulator {ECO:0000313|EMBL:KJF27498.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
two component, sigma54 specific, Fis family transcriptional regulator
SCNpilot_bf_inoc_scaffold_127_curated_37
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28066..29514)
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGT1_ALKOO
multi-sensor signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_127_curated_38
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

29593..29997
DNA (405bp) protein (135aa)
Positive regulator of sigma E, RseC/MucC id=2224708 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
sigma E positive regulator RseC/MucC; K03803 sigma-E factor negative regulatory protein RseC
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_127_curated_39
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

comp(30130..32685)
DNA (2556bp) protein (852aa)
ATPase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255DB80
silP; putative cation (copper) transporting P-type ATPase
Tax=GWC1_Treponema_61_84_curated
SCNpilot_bf_inoc_scaffold_127_curated_40
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33024..34730)
DNA (1707bp) protein (569aa)
UPI0003D62B9F related cluster n=1 Tax=unknown RepID=UPI0003D62B9F
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ETI91211.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_bf_inoc_scaffold_127_curated_41
unknown

Not on your lists

34905..35204
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_127_curated_42
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

35317..35574
DNA (258bp) protein (86aa)
Putative uncharacterized protein id=1867191 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_127_curated_43
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35657..36568)
DNA (912bp) protein (304aa)
homoserine O-succinyltransferase (EC:2.3.1.46); K00651 homoserine O-succinyltransferase [EC:2.3.1.46]
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
Homoserine O-succinyltransferase n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BHX0_THEXL
SCNpilot_bf_inoc_scaffold_127_curated_44
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36615..37919)
DNA (1305bp) protein (435aa)
O-acetylhomoserine sulfhydrylase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrylase {ECO:0000313|EMBL:AGA68444.1}; EC=2.5.1.49 {ECO:0000313|EMBL:AGA68444.1};; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
O-acetylhomoserine sulfhydrylase n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F3M7_DESDL
SCNpilot_bf_inoc_scaffold_127_curated_45
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

38361..39287
DNA (927bp) protein (309aa)
Putative uncharacterized protein id=3764547 bin=GWF2_Firmicute_57_13 species=Clostridium citroniae genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_57_13 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Tenericutes_57_13_curated
SCNpilot_bf_inoc_scaffold_127_curated_46
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(39272..40381)
DNA (1110bp) protein (370aa)
cshA2; DEAD/DEAH box helicase (EC:3.6.1.-)
DEAD-box ATP-dependent RNA helicase CshA n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZW0_CLOA9
Uncharacterized protein {ECO:0000313|EMBL:KEO81448.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
SCNpilot_bf_inoc_scaffold_127_curated_47
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40498..41304)
DNA (807bp) protein (269aa)
Polyphosphate kinase 2 n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SGW1_9CYAN
polyphosphate kinase 2
Tax=BJP_IG2157_Clostridiales_35_16
SCNpilot_bf_inoc_scaffold_127_curated_48
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41279..42127)
DNA (849bp) protein (283aa)
Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RPB9_HALHG
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase with PAS/PAC sensor {ECO:0000313|EMBL:ADQ13804.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Halanaerobium sp. (strain; sapolanicus)).;"
SCNpilot_bf_inoc_scaffold_127_curated_49
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42339..43562)
DNA (1224bp) protein (408aa)
Beta-lactamase domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MFR7_ALKOO
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ABW17706.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_127_curated_50
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43929..44852)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0NC55_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87705.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
integral membrane protein
SCNpilot_bf_inoc_scaffold_127_curated_51
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44956..46071)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0MYK0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87704.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
PucR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_127_curated_52
unknown

Not on your lists

46315..46845
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_127_curated_53
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46859..47779
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PS93_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH21747.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_127_curated_54
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47720..48985)
DNA (1266bp) protein (422aa)
hypothetical protein, partial n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000379E3B5
Uncharacterized protein {ECO:0000313|EMBL:KGG80055.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Major Facilitator Superfamily transporter
SCNpilot_bf_inoc_scaffold_127_curated_55
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49215..49595)
DNA (381bp) protein (127aa)
membrane protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D11D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY65229.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
SCNpilot_bf_inoc_scaffold_127_curated_56
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49666..50085)
DNA (420bp) protein (140aa)
ArsC family transcriptional regulator n=1 Tax=Clostridium sp. BL8 RepID=T0PBC1_9CLOT
ArsC family transcriptional regulator {ECO:0000313|EMBL:EQB87213.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
protein tyrosine phosphatase
SCNpilot_bf_inoc_scaffold_127_curated_57
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50113..51159)
DNA (1047bp) protein (349aa)
Arsenite efflux transporter n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PWS9_CLOSD
Arsenite efflux transporter ArsB {ECO:0000313|EMBL:KDR95412.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
arsB; arsenite efflux transporter; K03325 arsenite transporter, ACR3 family
SCNpilot_bf_inoc_scaffold_127_curated_58
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51261..51566)
DNA (306bp) protein (102aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PWS8_CLOSD
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CBH20893.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_127_curated_59
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51735..52751)
DNA (1017bp) protein (339aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VZM6_DESAS
GAF sensor-containing diguanylate cyclase
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:ACV63004.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
SCNpilot_bf_inoc_scaffold_127_curated_60
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(52887..54290)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B593D2
Uncharacterized protein {ECO:0000313|EMBL:AIQ56218.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
hypothetical protein
Displaying items 31-60 of 121 in total

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