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SCNpilot_bf_inoc_scaffold_539_curated

Search features with annotation key words

Displaying items 31-51 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_539_curated_31
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15594..15935
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RL17_ALKOO
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_539_curated_32
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16163..16993
DNA (831bp) protein (277aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000288086F
cobalt transporter ATP-binding subunit; K02006 cobalt/nickel transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_539_curated_33
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16978..17883
DNA (906bp) protein (302aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium arbusti RepID=UPI000287FA3F
cbiO; cobalt transporter ATP-binding subunit; K02006 cobalt/nickel transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_539_curated_34
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17893..18687
DNA (795bp) protein (265aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EKW1_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
ABC transporter permease
SCNpilot_bf_inoc_scaffold_539_curated_35
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18695..19468
DNA (774bp) protein (258aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
tRNA pseudouridine synthase A n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PJ60_9FIRM
TRNA pseudouridine synthase A
SCNpilot_bf_inoc_scaffold_539_curated_36
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19614..20048
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium ultunense Esp RepID=M1ZHY8_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_bf_inoc_scaffold_539_curated_37
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20064..20459
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PTS7_CLOSD
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_539_curated_38
GWE2_Clostridiales_32_10_curated, Clostridiales, Bacteria

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20563..22008
DNA (1446bp) protein (482aa)
Putative uncharacterized protein id=2189440 bin=GWE2_Clostridiales_32_10 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
AMMECR1 domain-containing protein
Tax=GWE2_Clostridiales_32_10_curated
SCNpilot_bf_inoc_scaffold_539_curated_39
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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22169..23959
DNA (1791bp) protein (597aa)
Glycoside hydrolase family 18 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A674_NATTJ
glycoside hydrolase family protein
Tax=BJP_IG2103_Clostridiales_50_15
SCNpilot_bf_inoc_scaffold_539_curated_40
unknown

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23971..24267
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_539_curated_41
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24268..25926
DNA (1659bp) protein (553aa)
FAD-dependent dehydrogenase domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2T4_CLOA9
FAD-dependent dehydrogenase domain-containing protein
FAD-dependent dehydrogenase domain-containing protein {ECO:0000313|EMBL:AFS79447.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_539_curated_42
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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26224..27807
DNA (1584bp) protein (528aa)
Transporter id=1720870 bin=GWB2_Clostridiales_37_7 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
transporter
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_539_curated_43
unknown

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27820..27918
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_539_curated_44
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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27966..28640
DNA (675bp) protein (225aa)
Alpha-glucosidase id=1720874 bin=GWB2_Clostridiales_37_7 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_539_curated_45
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28733..29161)
DNA (429bp) protein (143aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2); K00610 aspartate carbamoyltransferase regulatory subunit
Aspartate carbamoyltransferase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I3D5_9CLOT
Aspartate carbamoyltransferase {ECO:0000313|EMBL:ETA79796.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
SCNpilot_bf_inoc_scaffold_539_curated_46
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29148..30077)
DNA (930bp) protein (310aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=2 Tax=Youngiibacter RepID=V7I0N6_9CLOT
SCNpilot_bf_inoc_scaffold_539_curated_47
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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30567..31811
DNA (1245bp) protein (415aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Dihydroorotase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CXE7_9CLOT
dihydroorotase, multifunctional complex type
SCNpilot_bf_inoc_scaffold_539_curated_48
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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31967..32902
DNA (936bp) protein (312aa)
orotidine-5-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
orotidine 5''-phosphate decarboxylase id=1998923 bin=GWB2_Clostridiales_37_7 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_539_curated_49
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32913..33686
DNA (774bp) protein (258aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K1W5_CLOPA
2-polyprenylphenol hydroxylase-like oxidoreductase
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
SCNpilot_bf_inoc_scaffold_539_curated_50
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33679..34599
DNA (921bp) protein (307aa)
dihydroorotate dehydrogenase family protein; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Dihydroorotate dehydrogenase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZ22_CLOCD
SCNpilot_bf_inoc_scaffold_539_curated_51
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34722..35381)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PXN7_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH21202.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
Displaying items 31-51 of 51 in total

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