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SCNpilot_bf_inoc_scaffold_2866_curated_2

Organism: scnpilot_dereplicated_Solirubrobacterales_2

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 1627..2472

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 31.2
  • Coverage: 202.0
  • Bit_score: 66
  • Evalue 9.70e-08
Ribonuclease E n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5W8_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 31.2
  • Coverage: 202.0
  • Bit_score: 66
  • Evalue 6.90e-08
transcription termination factor Rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 32.7
  • Coverage: 168.0
  • Bit_score: 72
  • Evalue 2.30e-10

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Taxonomy

Novosphingobium aromaticivorans → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 846
ATGACCAAGACCGAGCTCGAATCCAAACATCTTTCTGACCTTCACCAGCTTGCCGCCGACGCCGGCGTCGAGCGGTACCGGATGCTCACGCGCGCCGAGCTGATCGAGCGCCTGAGCGACGGTGACGGCGGCGATTCCGCCTCCTCACGCGGCGGCGACGAGGAGCGCGAGCGCCCGCGGCGGCGTCGGCGGCGCTCGACTACCGGCCGCGAACGCGAGGAGCGCCAGGACGTCGAGGACGAAGAGGAGAAGCCCACCCGGGGCAGCCGCTCGCGCAAAGCCGCGGCCGACGAGGACGGCGACGAGTCGGACAAGGGCGCGGGCAAGGACGCCGAGGAGGATTCCGGCGACGACGAGGACGGCCCGCGGCCGAAACGCCGCCGCCGTCGGCGCCGCTTCGGCCGCCGCCGCGAGGGGCTCGCGATCCAGGATCTGCTGTTGCCGGCCGAGTCGGGCCGCCAGGCGGTCCTGCTCGCCGAGAGCCGCGAGGCGGCCACCGACCTGCTGCGCGGCGTCGCCGCCGACCTGGCCGCGGCCTCCGAGGGCCCCGATCCGGTCGCCCTCCTGATCGACCCGAGCCCCGAGGAGCTCGCCGACTGGAAGCGCGAGGCGCCCCAGGCCGAGCTCGTCTCCGCCGGTCAGGCCCGTCACGCGAACGATGCCCTGGCCGCGGCGCAGCGCCGCGCGGGCGACGGCGAAGACGTGATCCTCCTGATCGACTCCCTGACCCGCTTCACCGAGTCGTTCGGCGACACCGACGGCGCCAAGGAGCTCTTCGACGCCGGCCGCGGGGACATCAAGGGCAAGGGATCGCTGACCGTAGTGGTCGCTCTGGAGCGCGGCTAG
PROTEIN sequence
Length: 282
MTKTELESKHLSDLHQLAADAGVERYRMLTRAELIERLSDGDGGDSASSRGGDEERERPRRRRRRSTTGREREERQDVEDEEEKPTRGSRSRKAAADEDGDESDKGAGKDAEEDSGDDEDGPRPKRRRRRRRFGRRREGLAIQDLLLPAESGRQAVLLAESREAATDLLRGVAADLAAASEGPDPVALLIDPSPEELADWKREAPQAELVSAGQARHANDALAAAQRRAGDGEDVILLIDSLTRFTESFGDTDGAKELFDAGRGDIKGKGSLTVVVALERG*