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SCNpilot_bf_inoc_scaffold_5_curated

Search features with annotation key words

Displaying items 91-120 of 938 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_5_curated_91
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105915..106700
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037AD5C2
Uncharacterized protein {ECO:0000313|EMBL:AKC88265.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
fructosamine-3-kinase
SCNpilot_bf_inoc_scaffold_5_curated_92
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106714..108636)
DNA (1923bp) protein (641aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B7EA5
Sulfatase-modifying factor protein {ECO:0000313|EMBL:AHX13656.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_5_curated_93
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108723..109808
DNA (1086bp) protein (362aa)
Ribonuclease D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDD4_9GAMM
Ribonuclease D {ECO:0000313|EMBL:EIL97475.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease D
SCNpilot_bf_inoc_scaffold_5_curated_94
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110046..110930)
DNA (885bp) protein (295aa)
farnesyl-diphosphate synthase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Farnesyl-diphosphate synthase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GN63_THISH
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:ACL71924.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_bf_inoc_scaffold_5_curated_95
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111118..112254
DNA (1137bp) protein (379aa)
Squalene/phytoene synthase; K00801 farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Squalene/phytoene synthase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0D6_NITHN
Squalene/phytoene synthase {ECO:0000313|EMBL:ADE14462.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_bf_inoc_scaffold_5_curated_96
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112258..114201
DNA (1944bp) protein (648aa)
squalene-hopene cyclase (EC:5.4.99.17); K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129]
Squalene-hopene cyclase {ECO:0000313|EMBL:ADE14461.1}; EC=5.4.99.17 {ECO:0000313|EMBL:ADE14461.1};; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Squalene-hopene cyclase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0D5_NITHN
SCNpilot_bf_inoc_scaffold_5_curated_97
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114176..114919
DNA (744bp) protein (248aa)
Hopanoid-associated phosphorylase n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A748_METMM
hopanoid-associated phosphorylase
Hopanoid-associated phosphorylase {ECO:0000313|EMBL:AEG01842.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
SCNpilot_bf_inoc_scaffold_5_curated_98
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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114916..115908
DNA (993bp) protein (331aa)
nucleoside-diphosphate-sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219]
Dihydrokaempferol 4-reductase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTL0_9GAMM
Dihydrokaempferol 4-reductase {ECO:0000313|EMBL:EAR20966.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
SCNpilot_bf_inoc_scaffold_5_curated_99
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116131..117126
DNA (996bp) protein (332aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33)
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:AGG90995.1}; EC=4.1.1.33 {ECO:0000313|EMBL:AGG90995.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
diphosphomevalonate decarboxylase n=1 Tax=Nevskia ramosa RepID=UPI0003B66EC8
SCNpilot_bf_inoc_scaffold_5_curated_100
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117123..118148
DNA (1026bp) protein (342aa)
Mevalonate kinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NUA0_9GAMM
mevalonate kinase
Mevalonate kinase {ECO:0000313|EMBL:AGG90996.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_5_curated_101
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118169..120427
DNA (2259bp) protein (753aa)
3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC:1.1.1.34 2.7.1.36)
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; EC=1.1.1.88 {ECO:0000256|RuleBase:RU361219};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Hydroxymethylglutaryl-CoA reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUG9_9GAMM
SCNpilot_bf_inoc_scaffold_5_curated_102
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120420..121019
DNA (600bp) protein (200aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate Delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00202};; IPP:DMAPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUH0_9GAMM
SCNpilot_bf_inoc_scaffold_5_curated_103
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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121195..122325
DNA (1131bp) protein (377aa)
Radical SAM domain Fe-S oxidoreductase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPA0_9GAMM
Hopanoid biosynthesis associated radical SAM protein HpnH {ECO:0000313|EMBL:KEZ77090.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
hopanoid biosynthesis associated radical SAM protein HpnH
SCNpilot_bf_inoc_scaffold_5_curated_104

Not on your lists

122348..123466
DNA (1119bp) protein (373aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=mine drainage metagenome RepID=T1AI51_9ZZZZ
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EQD56188.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
family 2 glycosyl transferase
SCNpilot_bf_inoc_scaffold_5_curated_105

Not on your lists

123467..124762
DNA (1296bp) protein (432aa)
Marine sediment metagenome DNA, contig: S06H3_S21344 {ECO:0000313|EMBL:GAI48295.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_bf_inoc_scaffold_5_curated_106
unknown

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124756..125760
DNA (1005bp) protein (335aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_5_curated_107
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(125728..126807)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B775_METTP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK14549.1}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermophila (strain DSM 6194 / PT) (Methanothrix; thermophila (strain DSM 6194 / PT)).;"
SCNpilot_bf_inoc_scaffold_5_curated_108
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126900..127805)
DNA (906bp) protein (302aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CC980
SCNpilot_bf_inoc_scaffold_5_curated_109
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127930..129219)
DNA (1290bp) protein (430aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM-dependent methyltransferase n=1 Tax=mine drainage metagenome RepID=T1BW77_9ZZZZ
SAM-dependent methyltransferase {ECO:0000313|EMBL:GAN45235.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_5_curated_110
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129265..131262
DNA (1998bp) protein (666aa)
Prolyl oligopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ4_9GAMM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG88061.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_5_curated_111
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131335..133437
DNA (2103bp) protein (701aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360E9CB
hypothetical protein; K06888
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_5_curated_112
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133442..133933)
DNA (492bp) protein (164aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBS7_9GAMM
Membrane protein {ECO:0000313|EMBL:GAN45237.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_5_curated_113
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133933..134859)
DNA (927bp) protein (309aa)
Beta-propeller domain-containing protein, methanol dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45238.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
beta-propeller domain-containing protein, methanol dehydrogenase
SCNpilot_bf_inoc_scaffold_5_curated_114
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135017..135688)
DNA (672bp) protein (224aa)
LemA family protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C8376
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_5_curated_115
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135755..136126)
DNA (372bp) protein (124aa)
diacylglycerol kinase (EC:2.7.1.107)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CBE3A
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KGI77260.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_5_curated_116
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136273..136461
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WIY3_BURSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG18428.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_bf_inoc_scaffold_5_curated_117

Not on your lists

136458..138011
DNA (1554bp) protein (518aa)
sodium:solute symporter n=1 Tax=Variovorax paradoxus RepID=UPI000380EF42
Sodium:solute symporter family {ECO:0000313|EMBL:AGU10566.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Na+/solute symporter; K03307 solute:Na+ symporter, SSS family
SCNpilot_bf_inoc_scaffold_5_curated_118
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138090..138986)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y8S2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO78428.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_5_curated_119
unknown

Not on your lists

comp(139064..139780)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_5_curated_120
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140143..140973)
DNA (831bp) protein (277aa)
(protein release factor)-glutamine N5-methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacte
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365FBF1
Displaying items 91-120 of 938 in total

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