ggKbase home page

SCNpilot_BF_INOC_Rickettsiales_complete_39_4.fasta_19

Organism: SCNpilot_BF_INOC_Rickettsiales_complete_39_4

near complete RP 50 / 55 BSCG 47 / 51 ASCG 10 / 38
Location: comp(18323..18607)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JTN9_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 53.5
  • Coverage: 71.0
  • Bit_score: 80
  • Evalue 6.90e-13
hfq; RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 48.1
  • Coverage: 79.0
  • Bit_score: 80
  • Evalue 1.50e-13
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.1
  • Coverage: 79.0
  • Bit_score: 80
  • Evalue 7.50e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planktomarina temperata → Planktomarina → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
ATGTTTGAAACCAATACTTCTTGCGAAAAAGATCCCTTGATCGCAAGCTCTAAAAAAATGGCCAGTGGATTGCAAGATGCTTTCTTAAAAGAAATGGTCGCCAAAAGTATTCCTGTCACTGTTTTTTTAGTTAGCGGTATCAAGTTACAAGGTTGTATCATTGCTTACGATTCGTTTTGCTTCTTGTTAAAAAAGGATCAGATTATCCAGTTGCTCTATAAACATGCCATTTCTTCGGTTATGCCTATGGCTCCTTTTGCTTTTGATTATAACGGGACGATCTAA
PROTEIN sequence
Length: 95
MFETNTSCEKDPLIASSKKMASGLQDAFLKEMVAKSIPVTVFLVSGIKLQGCIIAYDSFCFLLKKDQIIQLLYKHAISSVMPMAPFAFDYNGTI*