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SCNpilot_BF_INOC_scaffold_949_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_949_curated_1
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1772
DNA (1770bp) protein (590aa)
mfd; Transcription-repair-coupling factor (EC:3.6.4.-) rbh
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
transcription-repair coupling factor n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003812FF8 rbh
SCNpilot_BF_INOC_scaffold_949_curated_2
unknown

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comp(1895..2371)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_949_curated_3
unknown

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comp(2572..3471)
DNA (900bp) protein (300aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_949_curated_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3483..4328)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
dimethyladenosine transferase (EC:2.1.1.-) rbh
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXY5_9FIRM rbh
SCNpilot_BF_INOC_scaffold_949_curated_5
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4497..4994
DNA (498bp) protein (166aa)
Deoxycytidylate deaminase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1B1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23457.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_949_curated_6
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5043..7256
DNA (2214bp) protein (738aa)
Formate acetyltransferase 1 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWF9_CLOCD rbh
formate acetyltransferase 1 rbh
Formate acetyltransferase 1 {ECO:0000313|EMBL:AEV67585.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_BF_INOC_scaffold_949_curated_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7272..7997
DNA (726bp) protein (242aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA69_9CLOT rbh
pyruvate formate-lyase 1-activating enzyme
SCNpilot_BF_INOC_scaffold_949_curated_8
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8078..8809
DNA (732bp) protein (244aa)
Probable transcriptional regulatory protein CLOLEP_02910 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWE5_9CLOT rbh
Probable transcriptional regulatory protein BN578_02375 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
conserved hypothetical protein TIGR01033 rbh
SCNpilot_BF_INOC_scaffold_949_curated_9
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9085..10755
DNA (1671bp) protein (557aa)
AMP-dependent synthetase and ligase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TAU1_9CLOT rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EGD48634.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
AMP-dependent synthetase and ligase rbh
SCNpilot_BF_INOC_scaffold_949_curated_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10815..12506
DNA (1692bp) protein (564aa)
PASTA domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7E4_9FIRM rbh
PASTA domain protein {ECO:0000313|EMBL:CDB41341.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
PASTA domain./Protein kinase domain.
SCNpilot_BF_INOC_scaffold_949_curated_11
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12752..13780
DNA (1029bp) protein (343aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7S7_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
heat shock gene repressor HrcA
SCNpilot_BF_INOC_scaffold_949_curated_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13827..14336
DNA (510bp) protein (170aa)
Protein GrpE n=1 Tax=Clostridium sp. MSTE9 RepID=J0WSM2_9CLOT
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
grpE; protein GrpE
SCNpilot_BF_INOC_scaffold_949_curated_13
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14376..16217
DNA (1842bp) protein (614aa)
Chaperone protein DnaK n=2 Tax=root RepID=R5MXV6_9FIRM rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
chaperone protein DnaK rbh
SCNpilot_BF_INOC_scaffold_949_curated_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

16367..17521
DNA (1155bp) protein (385aa)
Chaperone protein DnaJ n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y6Z4_9FIRM rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
chaperone protein DnaJ rbh
SCNpilot_BF_INOC_scaffold_949_curated_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17666..17848
DNA (183bp) protein (61aa)
Ribbon-helix-helix protein, CopG family n=1 Tax=Clostridium sp. MSTE9 RepID=J1H2C2_9CLOT
Ribbon-helix-helix protein, CopG family {ECO:0000313|EMBL:EJF39388.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
SCNpilot_BF_INOC_scaffold_949_curated_16
Paenibacillus barengoltzii, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17993..18301
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Paenibacillus sanguinis RepID=UPI00036B6924
Uncharacterized protein {ECO:0000313|EMBL:EOS57130.1}; TaxID=1235795 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus barengoltzii G22.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_949_curated_17
unknown

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comp(18176..18448)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_949_curated_18
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18540..18707)
DNA (168bp) protein (56aa)
Citrate synthase n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NHH0_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
citrate synthase
Displaying 18 items

View Taxonomy