ggKbase home page

SCNpilot_BF_INOC_scaffold_4119_curated_4

Organism: scnpilot_dereplicated_Clostridiales_2

partial RP 42 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 12 / 38 MC: 2
Location: comp(1116..1817)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CTV5_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 211.0
  • Bit_score: 265
  • Evalue 2.90e-68
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.0
  • Coverage: 211.0
  • Bit_score: 265
  • Evalue 4.10e-68
RNA polymerase sigma-28 subunit SigK similarity KEGG
DB: KEGG
  • Identity: 61.3
  • Coverage: 212.0
  • Bit_score: 261
  • Evalue 2.00e-67

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Caldisalinibacter kiritimatiensis → Caldisalinibacter → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 702
TTGATAGAGAATATATTGCAGCTTTTANNNNNNNNNNNNNTCTTTGTTTTTGGCTATATCACAAACGGCAGTTCCTTTCCTCAGCCTTTAAGCAAGGAAGAAGAATCTGAGCTTATTGAGAAATCCAATGAAGGCGATTTAGAAGCACGAAATACTCTTATTGAGAGAAACCTGCGTTTGGTGGCACATGTAATAAAAAAATACAAAACTGTGGGAATTGATCAGGAGGATTTGATTTCCATAGGAACCATCGGATTAATCAAGGCTGTATCAACATTTGACAACCGTAAGGGAATACGCCTTGCAACATATGCGGCTAAATGCATTGACAATGAGGTACTCATGACAATAAGAAGCGATAAAAAACTAAAGAAAGAGGTTTCTCTGCAGGGTCCACTGGGTACAGACAAGGAAGGAAACAACATTTATCTCATAGACATTATCAAGTATGAGGGCGAAGAAATAGTTGGCAGGCTTGATAAGGAAGAAAAAATTAAAGCTCTTGACGAAATCTTAGATAAAACTCTTCAAAAAAGAGAAAAAACAATAATCGAGATGCGATATGGCATAAGAAACAACGACCACAAAACACAGAGAGAAATTGCAAAGCTTCTTGGAATTTCGCGCTCCTATGTTTCGAGAATAGAGAAAAAGGCTTTGAAAAAACTTTACGATGCTCTCGTTTCAAACATAGGGAGTTAA
PROTEIN sequence
Length: 234
LIENILQLLXXXXXFVFGYITNGSSFPQPLSKEEESELIEKSNEGDLEARNTLIERNLRLVAHVIKKYKTVGIDQEDLISIGTIGLIKAVSTFDNRKGIRLATYAAKCIDNEVLMTIRSDKKLKKEVSLQGPLGTDKEGNNIYLIDIIKYEGEEIVGRLDKEEKIKALDEILDKTLQKREKTIIEMRYGIRNNDHKTQREIAKLLGISRSYVSRIEKKALKKLYDALVSNIGS*