ggKbase home page

OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 451-500 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_1860
Phylum: Bacteroidetes (80%)
5 3598 bp 39.22 5.29 89.63
OR_07182017_23_scaffold_2635
Species: Mucilaginibacter paludis (66.67%)
3 1702 bp 37.07 5.29 83.90
OR_07182017_23_scaffold_1710
Species: Flavihumibacter sp. ZG627 (50%)
2 2611 bp 39.56 5.29 94.79
OR_07182017_23_scaffold_1240
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3460 bp 38.55 5.29 97.28
OR_07182017_23_scaffold_3274
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1362 bp 36.64 5.29 100.00
OR_07182017_23_scaffold_719
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 5262 bp 38.33 5.30 95.44
OR_07182017_23_scaffold_1522
Species: Sporocytophaga myxococcoides (100%)
1 2914 bp 38.40 5.30 99.97
OR_07182017_23_scaffold_4057
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1104 bp 40.76 5.30 93.21
OR_07182017_23_scaffold_577
Phylum: Bacteroidetes (85.71%)
7 6210 bp 38.08 5.31 86.18
OR_07182017_23_scaffold_325
Order: Sphingobacteriales (66.67%)
9 9634 bp 39.32 5.31 92.64
OR_07182017_23_scaffold_1376
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 4012 bp 40.25 5.31 96.39
OR_07182017_23_scaffold_1162
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3647 bp 34.88 5.31 95.26
OR_07182017_23_scaffold_1505
Phylum: Bacteroidetes (80%)
5 2938 bp 38.12 5.31 94.76
OR_07182017_23_scaffold_2344
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1919 bp 37.47 5.32 87.55
OR_07182017_23_scaffold_340
Phylum: Bacteroidetes (100%)
13 14826 bp 34.79 5.32 95.22
OR_07182017_23_scaffold_891
Phylum: Bacteroidetes (50%)
4 4537 bp 39.34 5.32 83.65
OR_07182017_23_scaffold_662
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
12 7670 bp 39.20 5.32 95.55
OR_07182017_23_scaffold_1984
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2284 bp 37.83 5.32 87.87
OR_07182017_23_scaffold_697
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (57.14%)
7 5428 bp 37.40 5.33 84.73
OR_07182017_23_scaffold_199
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 14533 bp 40.32 5.33 94.48
OR_07182017_23_scaffold_1319
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 3294 bp 39.68 5.33 97.91
OR_07182017_23_scaffold_2572
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1746 bp 41.52 5.33 85.74
OR_07182017_23_scaffold_323
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (53.85%)
13 10954 bp 40.20 5.34 91.77
OR_07182017_23_scaffold_3374
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1320 bp 40.61 5.34 95.23
OR_07182017_23_scaffold_1758
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2557 bp 39.42 5.34 95.15
OR_07182017_23_scaffold_746
Order: Sphingobacteriales (50%)
4 5145 bp 37.71 5.34 82.68
OR_07182017_23_scaffold_1591
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2809 bp 36.06 5.34 99.96
OR_07182017_23_scaffold_2386
Species: Niastella koreensis (50%)
2 1877 bp 38.89 5.35 98.93
OR_07182017_23_scaffold_2137
Phylum: Bacteroidetes (66.67%)
3 2130 bp 37.98 5.35 95.21
OR_07182017_23_scaffold_2164
Species: Niastella koreensis (66.67%)
3 2101 bp 33.79 5.35 100.38
OR_07182017_23_scaffold_653
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 5691 bp 41.31 5.35 95.62
OR_07182017_23_scaffold_1054
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 4013 bp 38.13 5.35 90.31
OR_07182017_23_scaffold_1616
Order: Cytophagales (66.67%)
3 2772 bp 35.17 5.36 93.07
OR_07182017_23_scaffold_672
Species: Emticicia oligotrophica (50%)
4 5568 bp 39.60 5.36 97.58
OR_07182017_23_scaffold_1208
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3524 bp 38.31 5.36 90.49
OR_07182017_23_scaffold_952
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 5097 bp 36.45 5.36 91.94
OR_07182017_23_scaffold_982
Phylum: Bacteroidetes (80%)
5 4253 bp 36.96 5.36 96.21
OR_07182017_23_scaffold_2772
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1623 bp 39.99 5.36 93.72
OR_07182017_23_scaffold_781
Phylum: Bacteroidetes (80%)
5 4982 bp 37.52 5.36 94.06
OR_07182017_23_scaffold_1367
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3184 bp 40.80 5.37 95.07
OR_07182017_23_scaffold_870
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4609 bp 36.93 5.37 96.14
OR_07182017_23_scaffold_735
Phylum: Bacteroidetes (100%)
6 5200 bp 36.17 5.37 96.58
OR_07182017_23_scaffold_546
Phylum: Bacteroidetes (100%)
7 6483 bp 38.05 5.37 97.13
OR_07182017_23_scaffold_629
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 5799 bp 38.64 5.38 92.40
OR_07182017_23_scaffold_644
Genus: Flavihumibacter (57.14%)
7 5715 bp 37.43 5.38 90.76
OR_07182017_23_scaffold_3726
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1200 bp 42.00 5.38 93.00
OR_07182017_23_scaffold_2284
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1979 bp 43.86 5.38 101.42
OR_07182017_23_scaffold_329
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
14 13731 bp 39.68 5.39 92.31
OR_07182017_23_scaffold_1574
Phylum: Bacteroidetes (75%)
4 2837 bp 34.97 5.39 95.49
OR_07182017_23_scaffold_1322
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3282 bp 41.29 5.39 94.15
Displaying items 451-500 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.