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OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 751-800 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_3913
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1137 bp 36.59 4.35 89.45
OR_07182017_23_scaffold_2655
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1691 bp 37.91 4.35 98.99
OR_07182017_23_scaffold_3063
Species: Mucilaginibacter paludis (66.67%)
3 1450 bp 35.03 4.34 101.38
OR_07182017_23_scaffold_2356
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1904 bp 39.71 4.33 77.68
OR_07182017_23_scaffold_2989
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1491 bp 38.10 4.33 79.28
OR_07182017_23_scaffold_2993
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1490 bp 40.07 4.33 90.00
OR_07182017_23_scaffold_1776
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2536 bp 38.72 4.32 89.31
OR_07182017_23_scaffold_1537
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2886 bp 41.51 4.31 82.74
OR_07182017_23_scaffold_1877
Species: GWF2_Bacteroidetes_35_48_curated (50%)
2 2410 bp 36.22 4.29 79.67
OR_07182017_23_scaffold_2271
Order: Sphingobacteriales (66.67%)
3 1991 bp 39.43 4.29 94.17
OR_07182017_23_scaffold_4437
Species: Flavobacterium sp. AED (100%)
1 1017 bp 39.72 4.28 87.91
OR_07182017_23_scaffold_4445
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1016 bp 41.73 4.28 91.24
OR_07182017_23_scaffold_1787
Phylum: Bacteroidetes (66.67%)
3 2525 bp 37.39 4.28 95.17
OR_07182017_23_scaffold_3020
Species: Haliscomenobacter hydrossis (100%)
1 1476 bp 35.70 4.27 99.80
OR_07182017_23_scaffold_3844
Species: Fibrella aestuarina (50%)
2 1162 bp 40.36 4.26 96.82
OR_07182017_23_scaffold_1691
Species: Mucilaginibacter paludis (100%)
3 2644 bp 38.35 4.25 98.83
OR_07182017_23_scaffold_2291
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 1975 bp 40.00 4.25 98.43
OR_07182017_23_scaffold_2045
Species: Haliscomenobacter hydrossis (50%)
2 2224 bp 37.14 4.25 95.64
OR_07182017_23_scaffold_2927
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1521 bp 37.74 4.24 71.99
OR_07182017_23_scaffold_2637
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1702 bp 38.43 4.23 94.83
OR_07182017_23_scaffold_3596
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1242 bp 38.89 4.23 97.83
OR_07182017_23_scaffold_4216
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1066 bp 38.56 4.22 99.91
OR_07182017_23_scaffold_1519
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2923 bp 41.57 4.21 90.42
OR_07182017_23_scaffold_3814
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1175 bp 40.17 4.21 63.57
OR_07182017_23_scaffold_1834
Species: Niastella koreensis (100%)
1 2463 bp 38.12 4.20 99.88
OR_07182017_23_scaffold_3029
Species: Niastella koreensis (100%)
1 1469 bp 40.64 4.19 99.86
OR_07182017_23_scaffold_1580
Order: Sphingobacteriales (50%)
4 2831 bp 38.57 4.19 96.01
OR_07182017_23_scaffold_4352
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1037 bp 41.76 4.19 88.52
OR_07182017_23_scaffold_3777
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1185 bp 38.57 4.18 98.23
OR_07182017_23_scaffold_4485
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1008 bp 41.37 4.17 100.00
OR_07182017_23_scaffold_1696
Species: Emticicia oligotrophica (50%)
2 2631 bp 39.38 4.16 98.06
OR_07182017_23_scaffold_1458
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 3029 bp 38.69 4.16 85.57
OR_07182017_23_scaffold_4000
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1117 bp 36.97 4.16 86.75
OR_07182017_23_scaffold_1655
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3796 bp 42.12 4.15 98.47
OR_07182017_23_scaffold_2935
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1517 bp 37.57 4.15 93.54
OR_07182017_23_scaffold_1144
Phylum: Bacteroidetes (100%)
5 3698 bp 36.61 4.14 95.08
OR_07182017_23_scaffold_895
Phylum: Bacteroidetes (77.78%)
9 4530 bp 38.87 4.14 83.11
OR_07182017_23_scaffold_1737
Species: Niastella koreensis (50%)
2 2576 bp 41.38 4.13 93.40
OR_07182017_23_scaffold_1769
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2543 bp 38.14 4.13 93.43
OR_07182017_23_scaffold_1762
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2551 bp 36.93 4.12 87.85
OR_07182017_23_scaffold_1542
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2882 bp 38.65 4.11 89.52
OR_07182017_23_scaffold_3550
Species: Niastella koreensis (50%)
2 1256 bp 37.66 4.06 86.23
OR_07182017_23_scaffold_2307
Species: Flavihumibacter petaseus (50%)
2 1960 bp 42.60 4.06 96.58
OR_07182017_23_scaffold_2671
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1681 bp 40.63 4.02 86.02
OR_07182017_23_scaffold_1957
Species: Spirosoma radiotolerans (50%)
2 2316 bp 38.43 4.02 91.71
OR_07182017_23_scaffold_3626
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1234 bp 41.73 4.01 70.02
OR_07182017_23_scaffold_3188
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2707 bp 33.88 3.99 96.53
OR_07182017_23_scaffold_2500
Species: Pedobacter antarcticus (100%)
2 1802 bp 39.96 3.91 99.72
OR_07182017_23_scaffold_2794
Species: Flavihumibacter sp. ZG627 (50%)
2 1613 bp 40.42 3.91 95.04
OR_07182017_23_scaffold_1518
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2923 bp 41.40 3.90 99.97
Displaying items 751-800 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.