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OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 801-843 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_3187
Species: Niastella koreensis (100%)
1 1394 bp 39.96 5.49 99.86
OR_07182017_23_scaffold_2167
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2091 bp 35.25 5.88 99.86
OR_07182017_23_scaffold_4222
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1065 bp 33.90 4.93 99.72
OR_07182017_23_scaffold_2947
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1509 bp 41.42 5.27 100.00
OR_07182017_23_scaffold_4485
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1008 bp 41.37 4.17 100.00
OR_07182017_23_scaffold_3972
Species: Sphingobacterium sp. ML3W (100%)
1 1124 bp 39.32 4.94 87.01
OR_07182017_23_scaffold_2957
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1507 bp 37.03 4.88 63.11
OR_07182017_23_scaffold_2967
Species: Niastella koreensis (100%)
1 1504 bp 45.48 4.89 79.79
OR_07182017_23_scaffold_2210
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2047 bp 41.67 3.88 99.95
OR_07182017_23_scaffold_3241
Species: Haliscomenobacter hydrossis (100%)
1 1375 bp 36.58 6.22 99.93
OR_07182017_23_scaffold_2476
Species: Mucilaginibacter paludis (100%)
1 1815 bp 39.72 5.04 100.00
OR_07182017_23_scaffold_2481
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1812 bp 43.93 4.47 74.17
OR_07182017_23_scaffold_4017
Species: Niastella koreensis (100%)
1 1113 bp 36.39 4.99 95.96
OR_07182017_23_scaffold_973
Species: Spirosoma radiotolerans (100%)
1 4282 bp 36.03 5.18 99.21
OR_07182017_23_scaffold_2997
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1488 bp 40.99 5.24 100.00
OR_07182017_23_scaffold_3254
Species: Pedobacter kyungheensis (100%)
1 1371 bp 34.35 6.46 99.78
OR_07182017_23_scaffold_4024
Species: Pedobacter kyungheensis (100%)
1 1112 bp 40.47 5.13 99.82
OR_07182017_23_scaffold_2494
Species: Fibrella aestuarina (100%)
1 1803 bp 41.32 5.49 99.83
OR_07182017_23_scaffold_3005
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1483 bp 41.20 4.96 99.93
OR_07182017_23_scaffold_2496
Species: Niastella koreensis (100%)
1 1803 bp 37.83 5.16 100.00
OR_07182017_23_scaffold_1522
Species: Sporocytophaga myxococcoides (100%)
1 2914 bp 38.40 5.30 99.97
OR_07182017_23_scaffold_3784
Species: Flavihumibacter sp. ZG627 (100%)
1 1183 bp 38.46 3.30 73.54
OR_07182017_23_scaffold_1275
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 3396 bp 39.72 4.86 99.91
OR_07182017_23_scaffold_3274
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1362 bp 36.64 5.29 100.00
OR_07182017_23_scaffold_3020
Species: Haliscomenobacter hydrossis (100%)
1 1476 bp 35.70 4.27 99.80
OR_07182017_23_scaffold_4049
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1107 bp 41.37 4.61 100.00
OR_07182017_23_scaffold_3029
Species: Niastella koreensis (100%)
1 1469 bp 40.64 4.19 99.86
OR_07182017_23_scaffold_4312
Species: Flavihumibacter sp. ZG627 (100%)
1 1045 bp 38.18 4.74 99.90
OR_07182017_23_scaffold_2782
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1618 bp 43.08 4.64 85.29
OR_07182017_23_scaffold_2792
Species: Flavihumibacter sp. ZG627 (100%)
1 1614 bp 38.35 6.04 78.81
OR_07182017_23_scaffold_3309
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1348 bp 38.95 5.68 67.88
OR_07182017_23_scaffold_2799
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1604 bp 41.02 4.96 98.38
OR_07182017_23_scaffold_2034
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2235 bp 41.66 5.57 99.06
OR_07182017_23_scaffold_2802
Species: Flavobacterium sp. EM1308 (100%)
1 1603 bp 40.24 3.09 99.75
OR_07182017_23_scaffold_4085
Species: Pedobacter kyungheensis (100%)
1 1098 bp 39.44 5.19 99.73
OR_07182017_23_scaffold_4088
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1097 bp 39.93 3.83 93.25
OR_07182017_23_scaffold_2809
Species: Rhodonellum psychrophilum (100%)
1 1597 bp 35.69 5.82 99.94
OR_07182017_23_scaffold_1834
Species: Niastella koreensis (100%)
1 2463 bp 38.12 4.20 99.88
OR_07182017_23_scaffold_2301
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1962 bp 40.57 4.43 100.00
OR_07182017_23_scaffold_3068
Species: Mucilaginibacter paludis (100%)
1 1448 bp 39.43 3.63 79.97
OR_07182017_23_scaffold_1591
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2809 bp 36.06 5.34 99.96
OR_07182017_23_scaffold_3852
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1157 bp 35.52 3.63 99.83
OR_07182017_23_scaffold_3598
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1241 bp 43.19 5.56 99.84
Displaying items 801-843 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.