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OR_08142018_10m_0_1um_Thiotrichales_46_111

OR_08142018_10m_0_1um_Gammaproteobacteria_46_111
In projects: OR_08142018_10m_0_1um  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: OR_08142018_10m_0_1um_UNK

Properties

Avg. coverage: 110.74 Longest contig: 40.58 Kbp Bin length: 1.57 Mbp GC content: 46.15 %
Contigs count: 262 Features count: 1767 rRNAs count: 0 tRNAs count: 21

Genome completeness

near complete RP 49 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 14 / 38
Displaying items 201-250 of 262 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_08142018_10m_0_1um_scaffold_29185
Species: Alteromonas sp. ALT199 (50%)
2 1110 bp 48.29 101.62 100.27
OR_08142018_10m_0_1um_scaffold_18530
Species: Pseudomonas sp. CFII64 (50%)
2 1409 bp 44.57 78.25 84.95
OR_08142018_10m_0_1um_scaffold_32836
Species: Thioalkalimicrobium aerophilum (50%)
2 1709 bp 44.94 87.95 88.82
OR_08142018_10m_0_1um_scaffold_4613
Species: CG_Thiomicrospira_01 (50%)
2 2888 bp 46.64 101.70 91.72
OR_08142018_10m_0_1um_scaffold_23594
Species: Thioalkalimicrobium aerophilum (50%)
2 1244 bp 48.63 63.67 95.26
OR_08142018_10m_0_1um_scaffold_21754
Species: CG_Thiomicrospira_01 (50%)
2 1298 bp 48.23 75.00 95.69
OR_08142018_10m_0_1um_scaffold_43461
Species: Hydrogenovibrio marinus (50%)
2 1326 bp 41.55 80.66 98.87
OR_08142018_10m_0_1um_scaffold_33436
Species: Methylophaga lonarensis (50%)
2 1030 bp 48.35 96.70 93.79
OR_08142018_10m_0_1um_scaffold_25045
Species: Alteromonas australica (50%)
2 1205 bp 45.64 73.94 97.84
OR_08142018_10m_0_1um_scaffold_10858
Species: Pseudomonas sp. 21 (50%)
2 2271 bp 50.33 111.49 97.62
OR_08142018_10m_0_1um_scaffold_9468
Species: CG_Thiomicrospira_01 (50%)
2 1980 bp 44.34 85.45 77.12
OR_08142018_10m_0_1um_scaffold_24509
Species: Thiomicrospira crunogena (50%)
2 1218 bp 48.28 97.91 100.25
OR_08142018_10m_0_1um_scaffold_12234
Species: Alcanivorax pacificus (50%)
2 1741 bp 46.52 80.21 83.06
OR_08142018_10m_0_1um_scaffold_26485
Species: CG_Thiomicrospira_01 (50%)
2 1170 bp 43.93 81.41 87.69
OR_08142018_10m_0_1um_scaffold_18343
Species: Thiomicrospira crunogena (50%)
2 1416 bp 45.97 74.89 96.19
OR_08142018_10m_0_1um_scaffold_27011
Species: RHI_Gammaproteobacteria_63_22 (50%)
2 1157 bp 47.62 76.23 87.12
OR_08142018_10m_0_1um_scaffold_15700
Species: Thioalkalimicrobium aerophilum (50%)
2 1533 bp 42.27 82.49 93.54
OR_08142018_10m_0_1um_scaffold_28726
Species: Thioalkalimicrobium cyclicum (50%)
2 1530 bp 50.39 91.47 89.22
OR_08142018_10m_0_1um_scaffold_34793
Species: Thiomicrospira crunogena (50%)
2 1008 bp 48.02 78.13 100.30
OR_08142018_10m_0_1um_scaffold_18358
Species: Thioalkalimicrobium aerophilum (100%)
2 1415 bp 48.83 108.02 100.71
OR_08142018_10m_0_1um_scaffold_27033
Species: Solemya velum gill symbiont (50%)
2 1157 bp 43.30 77.53 89.97
OR_08142018_10m_0_1um_scaffold_19325
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
2 1380 bp 48.12 80.87 93.70
OR_08142018_10m_0_1um_scaffold_17766
Species: Hydrogenovibrio marinus (50%)
2 1440 bp 46.11 125.94 99.58
OR_08142018_10m_0_1um_scaffold_10406
Species: Thioalkalimicrobium aerophilum (50%)
2 2822 bp 46.17 109.55 103.33
OR_08142018_10m_0_1um_scaffold_29291
Species: Thiomicrospira crunogena (50%)
2 1759 bp 45.94 88.35 63.96
OR_08142018_10m_0_1um_scaffold_16351
Species: Thioalkalimicrobium aerophilum (50%)
2 1501 bp 52.17 71.65 99.53
OR_08142018_10m_0_1um_scaffold_15224
Species: Gallaecimonas xiamenensis (50%)
2 1557 bp 48.04 114.16 99.81
OR_08142018_10m_0_1um_scaffold_10421
Species: Thioalkalimicrobium cyclicum (50%)
2 1886 bp 41.83 138.87 84.31
OR_08142018_10m_0_1um_scaffold_18136
Species: Thioalkalimicrobium aerophilum (50%)
2 1425 bp 46.60 83.47 90.53
OR_08142018_10m_0_1um_scaffold_16363
Species: Thiomicrospira crunogena (50%)
2 2002 bp 45.20 106.77 88.86
OR_08142018_10m_0_1um_scaffold_25134
Species: Thioalkalimicrobium aerophilum (100%)
2 1203 bp 43.56 81.92 99.25
OR_08142018_10m_0_1um_scaffold_29823
Species: Hydrogenovibrio marinus (50%)
2 1097 bp 49.23 74.11 99.27
OR_08142018_10m_0_1um_scaffold_11984
Species: Thioalkalimicrobium aerophilum (50%)
2 1759 bp 49.86 75.47 84.93
OR_08142018_10m_0_1um_scaffold_16896
Species: Thiomicrospira crunogena (50%)
2 1476 bp 47.15 74.80 96.34
OR_08142018_10m_0_1um_scaffold_28792
Species: Thiomicrospira crunogena (50%)
2 1862 bp 46.89 80.08 95.06
OR_08142018_10m_0_1um_scaffold_19883
Species: Thiomicrospira crunogena (50%)
2 1360 bp 41.32 117.24 78.53
OR_08142018_10m_0_1um_scaffold_29844
Species: Luteibacter yeojuensis (50%)
2 1097 bp 48.59 82.04 74.93
OR_08142018_10m_0_1um_scaffold_9832
Species: Hydrogenovibrio marinus (50%)
2 1942 bp 45.88 79.17 91.45
OR_08142018_10m_0_1um_scaffold_53359
Species: Nitrosococcus halophilus (50%)
2 1322 bp 46.97 84.87 98.71
OR_08142018_10m_0_1um_scaffold_6691
Species: Photobacterium profundum (50%)
2 2369 bp 40.99 69.08 57.62
OR_08142018_10m_0_1um_scaffold_36937
Species: Thiothrix nivea (50%)
2 1513 bp 50.23 97.85 102.51
OR_08142018_10m_0_1um_scaffold_6958
Species: Shewanella baltica (50%)
2 2318 bp 45.51 80.37 100.17
OR_08142018_10m_0_1um_scaffold_2725
Species: Thioalkalimicrobium aerophilum (50%)
2 3904 bp 49.54 99.51 97.52
OR_08142018_10m_0_1um_scaffold_57668
Species: Thiobacillus prosperus (50%)
2 1286 bp 48.76 81.88 100.78
OR_08142018_10m_0_1um_scaffold_3185
Species: Thiomicrospira crunogena (50%)
2 3579 bp 45.57 86.46 94.47
OR_08142018_10m_0_1um_scaffold_25963
Species: Thiomicrospira crunogena (50%)
2 1182 bp 45.26 69.42 96.95
OR_08142018_10m_0_1um_scaffold_6991
Species: Pseudomonas fluorescens (100%)
1 2314 bp 47.58 124.72 99.83
OR_08142018_10m_0_1um_scaffold_22562
Species: Thioalkalimicrobium aerophilum (100%)
1 1273 bp 45.95 82.95 99.69
OR_08142018_10m_0_1um_scaffold_7556
Species: Thioalkalimicrobium aerophilum (100%)
1 2217 bp 47.27 107.85 96.08
OR_08142018_10m_0_1um_scaffold_34444
Species: CG_Thiomicrospira_01 (100%)
1 1014 bp 50.49 69.23 99.70
Displaying items 201-250 of 262 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.