ggKbase home page

RTP_02272018_0_2um_scaffold_750_16

Organism: RTP_02272018_0_2um_Hydrogenophilales_62_27

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: comp(15283..16233)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor id=12496989 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 57.1
  • Coverage: 319.0
  • Bit_score: 322
  • Evalue 4.60e-85
rpoS; RNA polymerase sigma factor RpoS similarity KEGG
DB: KEGG
  • Identity: 55.3
  • Coverage: 302.0
  • Bit_score: 313
  • Evalue 6.10e-83
Tax=CG_Hydro_01 similarity UNIPROT
DB: UniProtKB
  • Identity: 54.4
  • Coverage: 318.0
  • Bit_score: 322
  • Evalue 4.90e-85

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Hydro_01 → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 951
ATGTGGTCGGATGAGTTGCAGGATCAGAAATCACCCTACCGGGATACGGAAGATAGTGCCGAAACCGAACCCCGGGGCGCTGAGGCGCATGCAGATGAAGGCCATGACGATGAGGCGTTGGTTCATGACATCACGCAACGCTACTTCGAAGACATCAGCCGGCTGCGGGTACTCAGTGCCGACGAAGAACAGGACTACGCCCGCCGCATGAAGCGCGGGGACACCGAGGCGCGGGAGATCCTGATCACGCACAACCTCAGGCTGGTCGTGTATATCGCCAAACGCTATCTGGGACGTGGCCTGCCGCTGCTGGATCTGGTCGAGGAAGGCAACCTGGGGCTCATGCATGCCCTGGAGAAATTCGATCCGGATCGGGGCTTCCGCCTGTCCACCTACGCCATGTGGTGGATTCGCCAGTCGATCGACCGGGGCCTGATGAATTACTCACGCACCATTCGACTGCCCGTGCATGTGGTCAAGGAACTCAACGGTTGCCTGCGGGCAAAGCGAACCCTGGAAAAGCAGGGGATGCTGGATGTGGGGGCGGAGGCGATTGCCCACCTCACGGGCAAATCGGTCGAGGCTGTGCGCGAGGTGATGCAGTTGAACAGACCGCCCCTCCCGCTGGATGCCCCCCTGAGAATCGACCCCGATCTCACCCTGGGCGATGCCATCGCCGACGGGCGTTGCGTGCCCCCCGAGGAGCGCCTGTATCAAGCCGAACTTGAACAATATGTGACGGAATGGCTGGCCAAGCTTTCGGACAAGCACCGCTGGGTGATCGAGCGACGCTTCGGATTGAACAACCGGGACACCGCCACCCTGGAGGAACTGGCCGGGGACCTCCAGGTTACCCGCGAGCGGGTCCGGCAGATCCAGGTGGAGGCGCAGGAAAAACTGGTCATCGGACTCAGGGAAAAGGGTGTGGAAAAGGAAAACTGGCTGTTTTGA
PROTEIN sequence
Length: 317
MWSDELQDQKSPYRDTEDSAETEPRGAEAHADEGHDDEALVHDITQRYFEDISRLRVLSADEEQDYARRMKRGDTEAREILITHNLRLVVYIAKRYLGRGLPLLDLVEEGNLGLMHALEKFDPDRGFRLSTYAMWWIRQSIDRGLMNYSRTIRLPVHVVKELNGCLRAKRTLEKQGMLDVGAEAIAHLTGKSVEAVREVMQLNRPPLPLDAPLRIDPDLTLGDAIADGRCVPPEERLYQAELEQYVTEWLAKLSDKHRWVIERRFGLNNRDTATLEELAGDLQVTRERVRQIQVEAQEKLVIGLREKGVEKENWLF*