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RTP_092018_0_1um_scaffold_736_15

Organism: RTP_092018_0_1um_Hydrogenophilales_62_10

near complete RP 49 / 55 BSCG 49 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: comp(13307..16726)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.9
  • Coverage: 1116.0
  • Bit_score: 1884
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Thiobacillus thioparus RepID=UPI00036D1DB7 similarity UNIREF
DB: UNIREF100
  • Identity: 88.5
  • Coverage: 1141.0
  • Bit_score: 1994
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 84.9
  • Coverage: 1116.0
  • Bit_score: 1884
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3420
ATGGCGTTCTTCACACACACATTCCCTTCCCGCAGCCAGTCCGGGCTCGCGGGTGCCGCCGACGCGCTGTATCTGGCCGAAATGGCGCGGCAGGCCGCGCCGCTGGTGGTAGTGTGCGCCAGCGCGTGGGACGCCAATCGCCTGACCGAGGAGTTGCGCTGGTTCGATCCCGAACTGCGCATCTGCGCCTTCCCCGACTGGGAAACCCTGCCTTACGACACGTTTTCGCCCCACCCCGACCTGATTTCAGAGCGGCTGGCGACGCTGTACCAGATTTCGCGCGGTGAATTCGACATTGCCGTGGTGGCGCTTTCTACCGCGCTGTACCGGCTGGCGCCGCCTGCGTTTCTGGCTGCGCACACGTTTTTTCTCAAGCAGAAAGACACCCTCGACGAAGCCGCCTTCCGCACGCAAATGATGCTGGGCGGCTACAACCACGTGAATCAGGTGTTCGCGCCGGGCGAGTTTTCGATTCGCGGCGGCCTGATCGATTTGTTCCCGATGGGCAGTACGCTGCCGTACCGGATCGACCTGTTCGACAACGAAATCGATACGCTGCGCGCGTTCGATGTGGATACCCAGCGCAGCATTTATCCGGTGGGCGAAATCCGCCTGCTGCCGGCGCGCGAGTTTCCGCTCGACGAAACTGGCATCACCCGCTTCCGGCAAAACTTTCGCGAGCGTTTCGAGGGCGATCCGTCCAAATGCAAGCTGTACAAGGACGTCAGCAATGGCCTCGCGCCCGGCGGAATCGAGTATTACCTGCCGCTTTTTTTTGACGAGACCGCGACCCTGTTCGACTACCTGCCCAAGCAGGCCAAGCTGGTGAGCCATGGCGCGCTCGACCCCGCCGGCCAGGCGTTCTGGGCCGATGCGCAAAGCCGCCACCGCCTGCTGTCGGGCGACAAGGACCGTCCGCTGCTGCCACCCGCCGAACTGTTCCTGCCGACCGATGCGTTTTTCACCCGCGCCAGGGACTACGCGCGCCACGACGTCAGCCAGGTCCGCAGTGAGCAGACAGGCAGCGACCTCGCGCACCCGGTGCCGCCGATTTCGGTGGATCGCCGCGAAGCGCTGCCGGTGGTGCGCCTGGCCGGTTTCATCGAGCACTTTCAGGGTCGGACCCTGATCGTCGCGCCCTCCGCCGGTCGTCGCGAAACCCTGCATGAATACCTGGCCGAGCATGGCATTGCCGCCACGCTGTGCGACAACTGGGCCGACTGCCAGCAGCGCAGCGACCCCGTCCTGCTCACCTACGGCCCGCTTGCCGAAGGCTTCGTGGGCGATGCTACCCCGCTCGCGTTCATCACCGAAACCGAGCTTTACGCGATTCCGCCGAAAACCCGGCGCACCCGCGAGGCGCGCGCCACGCAGATCGATAATCTGCTGCGCGACCTGTCGGAACTGAAGCCGGGCGACCCGGTGGTGCACGCGCAATATGGCGTCGGCCAGTATCTCGGCCTCATCAATATGGATCTGGGCGACGGCGACACCGAGTTTTTGCACCTCGAATACGCCAAGGGCGACAAGCTGTATGTGCCGGTCGCCAGCCTGCACCTGATTTCGCGCTACAGCGGCGCCGGCGAGGGCGCGGCACCGCTGCACAAGCTCGGTACCGACCAGTGGGAAAAGGCGCGCCGCCGCGCGATGCAGGCCGCGCGCGATACCGCCGCCGAATTGCTCAATCTGTATGCCTTGCGCGCCGCGCGCGAAGGCCATGCGTTCGAGTTTTCGCTACACGACTACGAAGCCTTCGCCGAAGGCTTCGGCTACGAAGAAACGCCCGACCAGGCTGCGGCCATTGCCGCTGTCATGGCCGACATGCAGTCGGGCAAGCCGATGGACCGGCTGGTATGCGGCGATGTCGGCTTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCATTCATGGCGGTGATGGGCGGTTACCAGGTGGCCGTGCTGGTTCCTACCACGCTGCTTGCCGAGCAGCACTTCCAGAACTTCTCCGACCGTTTTTCGGCCTGGCCGGTCAAGCTGGCCGAACTGTCGCGCTTCCGCAGTCCCAAGGAGCAGGCCGAAGCCCTGCAGGCGCTAACCGACGGCAAGCTCGACATCGTCATCGGCACCCATCGCCTGATCCAGAAAGACGTGAAGTTTGCGCGCCTGGGTCTGGTCATCCTCGACGAGGAGCACCGCTTTGGCGTGCGCCAGAAAGAACAACTGAAGGCGTTACGCGCCGAAGTCGATGTGCTGACCCTGACTGCCACGCCGATTCCGCGCACTCTGGCGATGTCGCTCGAAGGCATCCGCGACTTCTCGGTGATTGCGACCGCGCCGCAGAAACGGCTGGCGGTCAAAACCTTCGTCCAGTCTTTTTCCAGCGGGCTGATCCGCGAGGCCGTGCTGCGCGAGCTGAAGCGCGGCGGCCAGGTGTACTTTCTGCACAACGAAGTCAGCACGATTCAGAACATGTTCGAGATGCTGGAAAAGCTGCTGCCCGAAGCCCGCATCCGCGTCGGCCATGGTCAGCAAAGCGAGCGCGAACTGGAGCAGGTGATGCGCGACTTTTACCAGCAGCGCTTCGACATCCTGCTGTGCACAACCATCATCGAAACCGGCATCGATATCCCCACGGCCAACACCATCCTGATCAATCGCGCCGACAAGTTCGGCCTGGCGCAACTACACCAGTTGCGTGGCCGGGTCGGCCGTTCGCACCATCAGGCCTTCGCCTACCTGCTGGTGGAGGAGGATCGCACCATCACACCGCAGGCGAAAAAACGCCTGGAAGCCATTCAATTGATGGAAGAACTGGGTTCGGGATTCCATCTGGCGATGCACGATCTGGAAATCCGTGGTTGCGGAGAAGTGCTGGGCGATAAGCAAAGCGGCGAAATCCTCGAAGTCGGTTTTTCGCTGTACAACGACATGCTGGCTGGCGCGGTCGCCAGCCTGAAAGCCGGCAACGAGCCCGATATGAGCCAGCCGCTGGGCGTGGTGTCCGAAATCAATCTGCACCTGCCCGCGTTGCTGCCAGTCGAATACTGCCCCGACGTGCACGAGCGGCTGGTGCTATACAAGCGACTGGCAAGCGTACACATCCTGGACGACCTGACCCAGTTGCAGGAAGAACTGATCGATCGCTTCGGCGCCCTGCCCGACCCGGCGCGGGCGCTTCTAAGCACCCATCGCCTGCGGCTGGCGGCCAAGCCGCTCGGCATTCTCAAGGTCGACGCCAGCGCGGAGAGCATCACGCTTCAATTCGTGCCGCAGCCGCCCATCGATCCGGGTCGCATCATCCAGCTCATCCAGTCCCGGCGCGACATCAAACTGGCGGGCGAAAACCGCCTGCGCTGGACCTTGCCCGCATCGGGCGATGCCGGAGTCGCTTCGGACACCCGGGTTGCACACGTCATCACCCTGTTTAACTTGCTTAAATAA
PROTEIN sequence
Length: 1140
MAFFTHTFPSRSQSGLAGAADALYLAEMARQAAPLVVVCASAWDANRLTEELRWFDPELRICAFPDWETLPYDTFSPHPDLISERLATLYQISRGEFDIAVVALSTALYRLAPPAFLAAHTFFLKQKDTLDEAAFRTQMMLGGYNHVNQVFAPGEFSIRGGLIDLFPMGSTLPYRIDLFDNEIDTLRAFDVDTQRSIYPVGEIRLLPAREFPLDETGITRFRQNFRERFEGDPSKCKLYKDVSNGLAPGGIEYYLPLFFDETATLFDYLPKQAKLVSHGALDPAGQAFWADAQSRHRLLSGDKDRPLLPPAELFLPTDAFFTRARDYARHDVSQVRSEQTGSDLAHPVPPISVDRREALPVVRLAGFIEHFQGRTLIVAPSAGRRETLHEYLAEHGIAATLCDNWADCQQRSDPVLLTYGPLAEGFVGDATPLAFITETELYAIPPKTRRTREARATQIDNLLRDLSELKPGDPVVHAQYGVGQYLGLINMDLGDGDTEFLHLEYAKGDKLYVPVASLHLISRYSGAGEGAAPLHKLGTDQWEKARRRAMQAARDTAAELLNLYALRAAREGHAFEFSLHDYEAFAEGFGYEETPDQAAAIAAVMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFQNFSDRFSAWPVKLAELSRFRSPKEQAEALQALTDGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAVKTFVQSFSSGLIREAVLRELKRGGQVYFLHNEVSTIQNMFEMLEKLLPEARIRVGHGQQSERELEQVMRDFYQQRFDILLCTTIIETGIDIPTANTILINRADKFGLAQLHQLRGRVGRSHHQAFAYLLVEEDRTITPQAKKRLEAIQLMEELGSGFHLAMHDLEIRGCGEVLGDKQSGEILEVGFSLYNDMLAGAVASLKAGNEPDMSQPLGVVSEINLHLPALLPVEYCPDVHERLVLYKRLASVHILDDLTQLQEELIDRFGALPDPARALLSTHRLRLAAKPLGILKVDASAESITLQFVPQPPIDPGRIIQLIQSRRDIKLAGENRLRWTLPASGDAGVASDTRVAHVITLFNLLK*