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RTP_092018_0_1um_scaffold_6597_8

Organism: RTP_092018_0_1um_Hydrogenophilales_62_10

near complete RP 49 / 55 BSCG 49 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: 3869..7948

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.3
  • Coverage: 1359.0
  • Bit_score: 2549
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 94.3
  • Coverage: 1359.0
  • Bit_score: 2549
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI00037807C3 similarity UNIREF
DB: UNIREF100
  • Identity: 94.6
  • Coverage: 1359.0
  • Bit_score: 2554
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4080
ATGGCTTATACCTTTACCGAGAAAAAACGTCTGCGCAAGAGCTTTGCCAGCCGGACCAACACCCTACCGGTGCCTTTTCTTCTGGCGACCCAGCTTGAGTCTTATCGTGCCTTCTTGCAGGAAGGCCGTTCGCGGGATGAACGTCTGAACGAAGGTTTGCAGGCCGCATTCACGTCTATTTTTCCGATCGAAAGCCATTCCAAGAATGCGCGTCTGGAGTACGTCAGCTATTTTCTCGGCGAGCCTGTCTTTGACATCAAGGAATGCCAGCAGCGCGGACTGACCTACTGCGCGCCACTGCGCGCAAAGGTACGTCTGGTGATCATGGACAAGGAAGCGTCCAAGCCGACGATCAAGGAAGTCAAGGAGCAGGAGGTCTACATGGGCGAAATTCCGCTCATGACGCCGACCGGCTCGTTTGTCATCAACGGTACCGAGCGCGTGATCGTGTCTCAACTGCACCGTTCGCCCGGCGTGTTCTTCGAGCATGACCGCGGCAAGACTCACAGTTCAGGCAAGCTGCTGTTCTCCGCCCGCGTGATTCCCTACCGCGGTTCGTGGCTGGACTTCGAGTTTGATGCCAAGGACATCCTGTTCTTCCGGGTCGACCGTCGCCGCAAGATGCCGGTCACCATTCTGCTTAAATCGCTCGGCTATACGCCCGAGACGATTCTGGATGCGTTCTTCAACAAGGACACCTTTTATATCAACACCCAGGGCATCCAGTTTGAGCTGGTCCCCGAGCGCCTTCGTGGCGAGCTCGCACGGTTTGATATTTGCGGCAAGGACGACCATGTCATCGTGGCCAAGGATAAACGCATCACTGCCAAGCACATCCGTGAACTGGAAGCGGCAGGGGTCAAGAAATGGGCAGTTCCCGCAGAGTTTGTCGTTGGCCGCGTGCTGGCGCACGACGTGGTCGACAAATCCACCGGTGAACTGGTTGCGCGAGCAAACGACGAGATTACCGAAGAGATGATAAATGCTCTCGCCGTAGCAGGCATCGACAAATTTAATACGTTGTATACCAACGAACTCGATCAGGGGGCGTTCATTTCGCAGACGCTGCGTGCCGACGACGCGGCAGACGCCTATGTGGCTAAAGTTGCAATTTATCGCATGATGCGTCCAGGCGAGCCGCCAACCGAGGATGCTGTCAATACGCTGTTTACCAACTTGTTCTTCAACGATGAGCGCTACGATCTGTCTGCGGTAGGCCGCATGAAGTTCAACCGTCGCATCGGAAGCGATGAGTTGACCGGTCTTGGTACGTTGTCGACAGAAGACATCGTGGCTGTGATCAAGATTTTGGTGGATTTGCGTAATGGTCGTGGAGAAGTCGATGACATCGATCACCTCGGTAATCGCCGCGTCCGTTCTGTAGGCGAACTGGCCGAGAATCAGTTCCGTGCCGGTCTGGTGCGTGTCGAGCGCGCCGTGCGCGAACGTCTGGGTCAGGCCGAGTCCGATAACCTGATGCCACACGACTTGATCAACGCAAAACCGGTTTCGGCAGCAATCAAGGAGTTTTTCGGTTCCAGTCAGCTGTCCCAGTTTATGGACCAGACCAATCCTTTGTCCGAGATTACTCACAAGCGCCGCGTATCGGCTCTTGGACCGGGTGGCTTGACGCGAGAGCGTGCAGGCTTCGAGGTGCGCGACGTGCACCCGACCCACTATGGCCGGGTCTGCCCAATTGAAACACCGGAAGGCCCGAATATTGGTCTGATTAACTCGCTGGCGCTGTATGCCCGCACCAACTGGTATGGCTTCATTGAAACGCCTTACCGCAAGGTGATCGACAACAAGGTCACCGATGAAATCGAATACCTGTCGGCGATCGAGGAAAGCAAATATGTGATCGCGCAGGCCAATGCCGATCTCGACGCAAAGAATCAGTTCAAGGACGACCTGGTGTCGTGCCGTTTCAAGAACGAATTTACGCTGTCGGCGCCAGACCGCATCGAGTACATGGACGTGGCGCCAGCGCAAATCGTGTCGGTAGCGGCTTCACTGATTCCGTTCCTCGAGCACGATGACGCCAACCGCGCCTTGATGGGTTCGAACATGCAGCGTCAGGCCGTGCCCTGTCTGCGTCCGGAGAAGTCCCTGGTCGGAACCGGTATCGAACGTACCGCTGCGGTTGACTCCGGAACGGTTGTCACGGCACATCGCGGTGGCCGTGTCGACTACATCGACGCAAGCCGCATCGTGATTCGCGTGCATGACGAAGAGGCGCGTGCCGGCGAAGTCGGCGTGGACATCTACTCGCTGATCAAATACACCCGTTCGAACCAAAACACCAACATCAACCAGCGTCCGCTGGTGAAGGTGGGTGACATGATTGCGCGCGGAGACGTGATTGCCGATGGCGCATCGACCGATATGGGCGAGCTGGCGCTGGGGCAGAACATGCTGGTCGCCTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATTCTGATCAACGAGAAGGTTGTTGCCGAAGACCGCTACACCTCGATCCACATCGAAGAACTCTCGGTAGTCGCACGCGACACCAAGCTGGGTGCGGAAGAAATCACCCGCGACATCTCCAACCTGGCCGAGCGCCAGTTGGGTCGCCTGGACGAATCCGGCATCATCGCCATCGGCGCGGAAGTTGAGGCCGGCGACGTGCTGGTCGGCAAGGTCACGCCCAAAGGCGAAACCCAGCTTACGCCTGAAGAAAAATTGCTGCGCGCCATCTTTGGCGAAAAGGCCAGCGATGTGAAAGACACTAGCCTGAAAGTGCCGTCCGGCATGTCGGGCGTGGTCATCGACGTGCAGGTGTTCACCCGCGAAGGTATCGAGCGCGACATGCGTGCGCAGTCGATTGTCGACACGCAGCTTGCCGAATACCGCAAGGACATGACCGACCGCATGCGTATCGTTGAAGACGACACGTTTGCCCGTCTGGAAAAACTCCTGCACCTGAAGGTGGCCAACGGTGGTCCGAAGAAGCTCGCCAAGGGCAGCAAGATCACTAATGACTACCTGGAGTCGGTCAACCGTCACGACTGGTTCGACATCCGCCTGGCTGATGACGAAGCCAGTCGCGCCGTCGAAGGCTTGAAGGACAGCCTGACCCAGAAGCGCATCGAATTTGATGCGATGTTTGAAGAGAAAAAGAAGAAGCTGACCGCCGGCGACGAACTACCGCCTGGCGTGCAGAAAATGGTCAAGGTCTATCTGGCGGTCAAGCGTCGCCTGCAGCCTGGCGACAAAATGGCAGGCCGCCATGGTAACAAGGGCGTGGTGTCGAAGATCGCGCCGGTGGAAGACATGCCGTTCATGGCCGATGGCCGTCCGGTCGATGTCGTTCTCAACCCGCTCGGCGTGCCGTCGCGGATGAACGTCGGCCAGATTCTGGAAACCCACCTCGGTTGGGCGGCTAAGGGGCTGGGCGAAAAAATCGGCCAGATGCTCGCGGCGCAGACCAAGACCATGGTGAAAGAGATCCGCAGCTTCCTCAAGGAAATCTACAACCAGTCCGGCAAGGTCGAGGATATCGACGGCTTCACCGATGATGAAATCATCGAGCTCGGGCGCAATCTGCAAAAAGGCGTGCCGTTTGCATCGCCGGTGTTTGACGGCGCATCCGAAGCCGAGATCCGTCGCATGCTGGTGCTGGCCGGCCTGCCGGAAGGCGGCCAGGTCACGCTGTACGACGGTCGCACCGGTGAGGCATTCGACCGCCAGGTGACCGTCGGCTACAAGCACGTACTGAAGCTGCATCACCTGGTTGACGACAAGATGCACGCGCGCTCCACGGGTCCGTACTCGCTGGTTACCCAGCAACCGCTGGGCGGCAAGGCGCAGTTCGGCGGACAGCGCTTTGGTGAGATGGAGGTGTGGGCGCTGGAAGCCTACGGCGCATCCTACGTGCTGCAGGAAATGTTGACAGTGAAGTCGGACGATGTAAACGGCCGTACCAAGATGTACGAGAGCATCGTCAAGGGCGAACACAAGATCGAGGCTGGAATGCCGGAGTCGTTCAACGTGCTGGTGAAGGAAATCCGCTCGCTGGGCATCGACATCGATCTGGAACGTTATTAA
PROTEIN sequence
Length: 1360
MAYTFTEKKRLRKSFASRTNTLPVPFLLATQLESYRAFLQEGRSRDERLNEGLQAAFTSIFPIESHSKNARLEYVSYFLGEPVFDIKECQQRGLTYCAPLRAKVRLVIMDKEASKPTIKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDAKDILFFRVDRRRKMPVTILLKSLGYTPETILDAFFNKDTFYINTQGIQFELVPERLRGELARFDICGKDDHVIVAKDKRITAKHIRELEAAGVKKWAVPAEFVVGRVLAHDVVDKSTGELVARANDEITEEMINALAVAGIDKFNTLYTNELDQGAFISQTLRADDAADAYVAKVAIYRMMRPGEPPTEDAVNTLFTNLFFNDERYDLSAVGRMKFNRRIGSDELTGLGTLSTEDIVAVIKILVDLRNGRGEVDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVRERLGQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNWYGFIETPYRKVIDNKVTDEIEYLSAIEESKYVIAQANADLDAKNQFKDDLVSCRFKNEFTLSAPDRIEYMDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKSLVGTGIERTAAVDSGTVVTAHRGGRVDYIDASRIVIRVHDEEARAGEVGVDIYSLIKYTRSNQNTNINQRPLVKVGDMIARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILINEKVVAEDRYTSIHIEELSVVARDTKLGAEEITRDISNLAERQLGRLDESGIIAIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLKVPSGMSGVVIDVQVFTREGIERDMRAQSIVDTQLAEYRKDMTDRMRIVEDDTFARLEKLLHLKVANGGPKKLAKGSKITNDYLESVNRHDWFDIRLADDEASRAVEGLKDSLTQKRIEFDAMFEEKKKKLTAGDELPPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIAPVEDMPFMADGRPVDVVLNPLGVPSRMNVGQILETHLGWAAKGLGEKIGQMLAAQTKTMVKEIRSFLKEIYNQSGKVEDIDGFTDDEIIELGRNLQKGVPFASPVFDGASEAEIRRMLVLAGLPEGGQVTLYDGRTGEAFDRQVTVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKMYESIVKGEHKIEAGMPESFNVLVKEIRSLGIDIDLERY*