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RTP_03222018_0_2um_Betaproteobacteria_48_16

In projects: RTP_03222018_0_2um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 301 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_03222018_0_2um_scaffold_26011
Species: Achromobacter sp. RTa (50%)
2 2975 bp 50.55 11.55 59.70
RTP_03222018_0_2um_scaffold_69997
Species: Polaromonas sp. JS666 (50%)
2 1397 bp 52.04 10.31 81.17
RTP_03222018_0_2um_scaffold_67414
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
2 1444 bp 42.38 10.91 99.10
RTP_03222018_0_2um_scaffold_89069
Species: Burkholderia sp. MSHR3999 (50%)
2 1117 bp 46.46 20.55 60.97
RTP_03222018_0_2um_scaffold_27842
Species: Burkholderia mallei (50%)
2 2843 bp 51.81 12.35 93.28
RTP_03222018_0_2um_scaffold_66236
Species: Nitrosomonas sp. AL212 (50%)
2 1467 bp 48.40 9.61 93.46
RTP_03222018_0_2um_scaffold_80037
Species: Burkholderia ambifaria (50%)
2 1235 bp 44.53 17.00 49.55
RTP_03222018_0_2um_scaffold_78824
Species: GWA2_Gallionellales_59_43_curated (50%)
2 1253 bp 46.93 12.33 86.19
RTP_03222018_0_2um_scaffold_54732
Species: Thiobacillus denitrificans (100%)
2 1730 bp 46.07 13.01 100.06
RTP_03222018_0_2um_scaffold_48654
Species: Sulfuricella sp. T08 (100%)
2 1901 bp 48.66 11.84 77.17
RTP_03222018_0_2um_scaffold_59375
Species: Pseudogulbenkiania ferrooxidans (50%)
2 1614 bp 46.03 12.17 88.48
RTP_03222018_0_2um_scaffold_65971
Species: CG_Beta_01 (50%)
2 1472 bp 47.21 13.86 89.06
RTP_03222018_0_2um_scaffold_40293
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 3220 bp 46.80 14.95 42.11
RTP_03222018_0_2um_scaffold_33650
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 2502 bp 47.36 10.61 97.00
RTP_03222018_0_2um_scaffold_47685
Species: Pseudogulbenkiania ferrooxidans (50%)
2 1932 bp 49.53 9.78 84.01
RTP_03222018_0_2um_scaffold_71149
Species: Sulfuricella denitrificans (50%)
2 1377 bp 49.16 11.76 78.43
RTP_03222018_0_2um_scaffold_31647
Species: Nitrosomonas sp. Is79A3 (50%)
2 2611 bp 41.55 16.03 44.35
RTP_03222018_0_2um_scaffold_33152
Species: Comamonas aquatica (100%)
1 2529 bp 45.35 21.65 23.01
RTP_03222018_0_2um_scaffold_93719
Species: Ferriphaselus amnicola (100%)
1 1065 bp 46.67 9.72 99.72
RTP_03222018_0_2um_scaffold_80590
Species: R_Burkholderiales_69_20 (100%)
1 1227 bp 49.63 9.90 61.86
RTP_03222018_0_2um_scaffold_86638
Species: Nitrosomonas sp. AL212 (100%)
1 1147 bp 47.52 13.08 99.91
RTP_03222018_0_2um_scaffold_63340
Species: Burkholderia sp. KJ006 (100%)
1 1526 bp 40.24 16.71 33.42
RTP_03222018_0_2um_scaffold_87546
Species: Burkholderia ambifaria (100%)
1 1135 bp 50.48 9.52 99.91
RTP_03222018_0_2um_scaffold_61132
Species: CG_Beta_01 (100%)
1 1575 bp 50.73 12.67 100.00
RTP_03222018_0_2um_scaffold_35497
Species: Sulfuricella denitrificans (100%)
1 2411 bp 45.71 11.01 92.58
RTP_03222018_0_2um_scaffold_90139
Species: GWA2_Gallionellales_60_142_curated (100%)
1 1104 bp 45.83 12.50 92.66
RTP_03222018_0_2um_scaffold_87079
Species: Ralstonia solanacearum (100%)
1 1141 bp 46.89 10.65 99.65
RTP_03222018_0_2um_scaffold_80909
Species: RBG_16_Betaproteobacteria_58_11_curated (100%)
1 1222 bp 50.65 12.64 99.92
RTP_03222018_0_2um_scaffold_49445
Species: Acidovorax citrulli (100%)
1 1877 bp 48.32 11.03 94.94
RTP_03222018_0_2um_scaffold_76252
Species: Snodgrassella alvi (100%)
1 1292 bp 49.07 15.21 90.56
RTP_03222018_0_2um_scaffold_66092
Species: RBG_16_Betaproteobacteria_58_11_curated (100%)
1 1469 bp 41.73 11.64 62.90
RTP_03222018_0_2um_scaffold_40136
Species: Herbaspirillum seropedicae (100%)
1 2203 bp 51.07 16.27 99.95
RTP_03222018_0_2um_scaffold_80926
Species: CG_Beta_01 (100%)
1 1222 bp 46.97 12.40 86.66
RTP_03222018_0_2um_scaffold_97420
Species: Advenella kashmirensis (100%)
1 1024 bp 42.97 9.52 48.63
RTP_03222018_0_2um_scaffold_63684
Species: Burkholderia sp. KJ006 (100%)
1 1520 bp 40.26 16.97 33.55
RTP_03222018_0_2um_scaffold_25573
Species: Sulfuricella denitrificans (100%)
1 3009 bp 50.58 10.22 99.20
RTP_03222018_0_2um_scaffold_7279
Species: Nitrosomonas sp. AL212 (100%)
1 6312 bp 51.93 10.74 99.95
RTP_03222018_0_2um_scaffold_42185
Species: Nitrosomonas sp. AL212 (100%)
1 2128 bp 45.86 15.30 82.33
RTP_03222018_0_2um_scaffold_60883
Species: Sulfuricella denitrificans (100%)
1 1580 bp 43.42 9.87 63.04
RTP_03222018_0_2um_scaffold_70847
Species: R_Gallionellales_57_47 (100%)
1 1382 bp 47.32 20.19 70.98
RTP_03222018_0_2um_scaffold_59046
Species: CG_Beta_01 (100%)
1 1622 bp 51.05 11.47 99.88
RTP_03222018_0_2um_scaffold_83201
Species: Methylotenera versatilis (100%)
1 1191 bp 47.94 16.75 100.00
RTP_03222018_0_2um_scaffold_45862
Species: BJP_08E140C01_10KDA_Methylophilales_47_88 (100%)
1 1992 bp 44.43 13.93 94.43
RTP_03222018_0_2um_scaffold_70106
Species: R_Burkholderiales_57_36 (100%)
1 1395 bp 47.53 12.04 99.78
RTP_03222018_0_2um_scaffold_50858
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1837 bp 48.72 10.94 96.84
RTP_03222018_0_2um_scaffold_32720
Species: Nitrosomonas sp. AL212 (100%)
1 2552 bp 47.69 21.69 83.46
RTP_03222018_0_2um_scaffold_97776
Species: Aromatoleum aromaticum (100%)
1 1020 bp 48.92 10.00 91.47
RTP_03222018_0_2um_scaffold_28475
Species: Nitrosomonas sp. AL212 (100%)
1 2801 bp 46.41 11.35 34.27
RTP_03222018_0_2um_scaffold_80048
Species: CG_Beta_01 (100%)
1 1235 bp 49.39 11.90 99.84
RTP_03222018_0_2um_scaffold_41094
Species: Sulfuricella sp. T08 (100%)
1 2168 bp 48.85 13.98 99.91
Displaying items 251-300 of 301 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.