ggKbase home page

RTP_01242018_0_2um_scaffold_2308_5

Organism: RTP_01242018_0_2um_Hydrogenophilales_61_5

megabin RP 51 / 55 MC: 21 BSCG 48 / 51 MC: 17 ASCG 12 / 38 MC: 4
Location: comp(1557..2129)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor id=1304133 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb similarity UNIREF
DB: UNIREF100
  • Identity: 86.7
  • Coverage: 188.0
  • Bit_score: 339
  • Evalue 2.20e-90
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 47.9
  • Coverage: 188.0
  • Bit_score: 172
  • Evalue 5.90e-41
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 92.6
  • Coverage: 188.0
  • Bit_score: 356
  • Evalue 1.40e-95

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYD1_FULL_Hydrogenophilales_62_11_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGTCTTTGAACACGCTCGACCCTCAGCGCTGGCTGGCCGACCATGGCGACTACCTGTTCCGCGTGGCGCGCCGCCAGCTGCATTCCGACGCGCTGGCCGAAGACGCGGTGCAGGAGACCCTGCTGGCCGCACTGTCGGCGCAGGCCCGTTACGCGGGTGACGCCAGTCCGCGCACCTGGCTCTGCGCCATCCTCAAGCACAAGATCGTCGACGCCATCCGCCGGCAGGTGCGCGAAGTGGAAATCCCGCGCGACGCCGACGGCGAGGAAGCGGTCGATAGCCTGTTCAAGCAGGACGGCCACTGGGCCGAGCCGCTGCGTCCCTGGGGCAACCCCCACACCGAGGCCGAACTGAGCCAGTTGCGGCGCGTGCTCGACGAGTGCGCCGACCGCCTGAAGCCGGCGATGGCGCAGGTGTTCAGCCTGCGCGAAGTGGCCGGCATGGAAACTGAAGAAATCTGTAAGGAACTGGGCATCACCCCGACCAACTGCTGGGTACTGTTGCACCGGGCGCGGCTGTTCATGCGGCAATGTCTGGAGCTGAATGGCTTTTCAAAGGCGGGCGCGGCATGA
PROTEIN sequence
Length: 191
MSLNTLDPQRWLADHGDYLFRVARRQLHSDALAEDAVQETLLAALSAQARYAGDASPRTWLCAILKHKIVDAIRRQVREVEIPRDADGEEAVDSLFKQDGHWAEPLRPWGNPHTEAELSQLRRVLDECADRLKPAMAQVFSLREVAGMETEEICKELGITPTNCWVLLHRARLFMRQCLELNGFSKAGAA*