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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 51-100 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_2747
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 3615 bp 65.56 6.31 94.02
RTP_01242018_0_2um_scaffold_2759
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3596 bp 60.29 6.17 85.18
RTP_01242018_0_2um_scaffold_2770
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 3583 bp 59.00 5.19 74.10
RTP_01242018_0_2um_scaffold_2523
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 4007 bp 64.64 5.69 86.92
RTP_01242018_0_2um_scaffold_2791
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3535 bp 61.98 6.28 93.66
RTP_01242018_0_2um_scaffold_2292
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4541 bp 61.44 7.04 83.11
RTP_01242018_0_2um_scaffold_3388
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 2922 bp 60.06 5.49 94.15
RTP_01242018_0_2um_scaffold_3391
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 2918 bp 64.70 5.91 98.59
RTP_01242018_0_2um_scaffold_2053
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 5253 bp 58.67 5.31 90.58
RTP_01242018_0_2um_scaffold_1975
Order: Hydrogenophilales (50%)
6 5473 bp 58.74 5.70 88.27
RTP_01242018_0_2um_scaffold_2325
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 4451 bp 65.38 5.59 95.64
RTP_01242018_0_2um_scaffold_1730
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 6500 bp 63.97 6.00 98.77
RTP_01242018_0_2um_scaffold_2839
Order: Hydrogenophilales (100%)
6 3482 bp 61.49 5.21 99.51
RTP_01242018_0_2um_scaffold_2841
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 3472 bp 56.74 7.73 93.52
RTP_01242018_0_2um_scaffold_4509
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 2235 bp 50.38 5.84 92.08
RTP_01242018_0_2um_scaffold_2337
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4412 bp 58.41 5.95 99.55
RTP_01242018_0_2um_scaffold_4769
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2127 bp 62.62 6.21 97.32
RTP_01242018_0_2um_scaffold_3436
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2883 bp 58.31 5.83 88.80
RTP_01242018_0_2um_scaffold_2607
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 3849 bp 57.63 6.16 87.84
RTP_01242018_0_2um_scaffold_2871
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 3420 bp 57.66 5.22 91.32
RTP_01242018_0_2um_scaffold_2110
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 5033 bp 51.08 5.42 92.87
RTP_01242018_0_2um_scaffold_2889
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3398 bp 62.65 6.31 97.29
RTP_01242018_0_2um_scaffold_2638
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3803 bp 58.61 5.29 84.64
RTP_01242018_0_2um_scaffold_2388
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4278 bp 64.17 5.40 91.09
RTP_01242018_0_2um_scaffold_4308
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2315 bp 61.81 4.99 93.56
RTP_01242018_0_2um_scaffold_2393
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4260 bp 61.43 5.81 96.69
RTP_01242018_0_2um_scaffold_2907
Order: Hydrogenophilales (50%)
6 3374 bp 57.23 5.47 86.69
RTP_01242018_0_2um_scaffold_2660
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3755 bp 63.25 6.11 96.19
RTP_01242018_0_2um_scaffold_3238
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3059 bp 61.95 6.77 89.15
RTP_01242018_0_2um_scaffold_3509
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2817 bp 62.30 4.90 96.17
RTP_01242018_0_2um_scaffold_3516
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2805 bp 58.40 5.19 82.14
RTP_01242018_0_2um_scaffold_2173
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4877 bp 62.93 5.07 83.54
RTP_01242018_0_2um_scaffold_2182
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4859 bp 64.15 6.20 97.24
RTP_01242018_0_2um_scaffold_3527
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2798 bp 57.33 5.74 79.20
RTP_01242018_0_2um_scaffold_2696
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3689 bp 58.80 5.25 88.15
RTP_01242018_0_2um_scaffold_2700
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3682 bp 61.52 5.46 97.04
RTP_01242018_0_2um_scaffold_2956
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3305 bp 63.54 5.40 84.24
RTP_01242018_0_2um_scaffold_3534
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2790 bp 63.98 6.56 79.03
RTP_01242018_0_2um_scaffold_2964
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3289 bp 56.98 4.70 90.57
RTP_01242018_0_2um_scaffold_2202
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4808 bp 56.24 6.55 52.60
RTP_01242018_0_2um_scaffold_2971
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3283 bp 63.27 3.70 90.65
RTP_01242018_0_2um_scaffold_4888
Order: Hydrogenophilales (80%)
5 2091 bp 55.91 6.96 92.68
RTP_01242018_0_2um_scaffold_4123
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2412 bp 63.76 4.10 95.65
RTP_01242018_0_2um_scaffold_2720
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3653 bp 60.69 5.95 88.45
RTP_01242018_0_2um_scaffold_5262
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 1962 bp 58.46 4.74 89.76
RTP_01242018_0_2um_scaffold_2225
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4755 bp 56.93 5.99 85.24
RTP_01242018_0_2um_scaffold_3315
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2995 bp 58.36 5.66 97.26
RTP_01242018_0_2um_scaffold_1640
Order: Hydrogenophilales (60%)
5 7019 bp 56.13 6.05 93.95
RTP_01242018_0_2um_scaffold_5545
Species: Thiobacillus denitrificans (80%)
5 1876 bp 55.81 5.44 85.87
RTP_01242018_0_2um_scaffold_3071
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3198 bp 63.16 4.92 97.75
Displaying items 51-100 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.