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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1001-1050 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_10662
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1218 bp 57.39 4.19 91.38
RTP_01242018_0_2um_scaffold_10155
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1253 bp 61.45 4.19 83.32
RTP_01242018_0_2um_scaffold_4447
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2255 bp 63.46 4.19 99.91
RTP_01242018_0_2um_scaffold_9239
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1326 bp 57.47 4.19 100.00
RTP_01242018_0_2um_scaffold_9229
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1327 bp 60.81 4.18 89.30
RTP_01242018_0_2um_scaffold_7792
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1474 bp 62.08 4.17 94.64
RTP_01242018_0_2um_scaffold_12374
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1115 bp 61.52 4.17 100.36
RTP_01242018_0_2um_scaffold_7777
Species: Thiobacillus denitrificans (100%)
2 1476 bp 63.89 4.17 97.36
RTP_01242018_0_2um_scaffold_4672
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2162 bp 63.04 4.16 89.36
RTP_01242018_0_2um_scaffold_14497
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1013 bp 62.29 4.15 99.80
RTP_01242018_0_2um_scaffold_7739
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1482 bp 57.69 4.15 87.65
RTP_01242018_0_2um_scaffold_12973
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1085 bp 62.40 4.15 99.82
RTP_01242018_0_2um_scaffold_6906
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1596 bp 54.70 4.14 69.74
RTP_01242018_0_2um_scaffold_9056
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1342 bp 62.52 4.14 96.80
RTP_01242018_0_2um_scaffold_9921
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1269 bp 56.82 4.14 91.25
RTP_01242018_0_2um_scaffold_6516
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1665 bp 57.30 4.14 84.68
RTP_01242018_0_2um_scaffold_14495
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1014 bp 60.36 4.14 100.30
RTP_01242018_0_2um_scaffold_7709
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1486 bp 52.49 4.14 48.86
RTP_01242018_0_2um_scaffold_7467
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1520 bp 57.57 4.14 84.87
RTP_01242018_0_2um_scaffold_6896
Species: Thiobacillus denitrificans (100%)
3 1597 bp 67.94 4.13 98.43
RTP_01242018_0_2um_scaffold_7697
Order: Hydrogenophilales (100%)
3 1488 bp 60.22 4.13 85.89
RTP_01242018_0_2um_scaffold_5167
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1997 bp 64.50 4.13 99.90
RTP_01242018_0_2um_scaffold_12856
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1091 bp 64.07 4.12 97.62
RTP_01242018_0_2um_scaffold_13578
Order: Hydrogenophilales (66.67%)
3 1055 bp 57.16 4.12 96.11
RTP_01242018_0_2um_scaffold_4123
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2412 bp 63.76 4.10 95.65
RTP_01242018_0_2um_scaffold_13437
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1062 bp 61.58 4.10 100.00
RTP_01242018_0_2um_scaffold_6827
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1608 bp 62.19 4.10 98.13
RTP_01242018_0_2um_scaffold_9318
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1319 bp 59.89 4.09 92.34
RTP_01242018_0_2um_scaffold_8860
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1358 bp 57.00 4.09 98.53
RTP_01242018_0_2um_scaffold_11350
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1174 bp 58.77 4.09 89.95
RTP_01242018_0_2um_scaffold_12708
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1099 bp 59.33 4.09 100.18
RTP_01242018_0_2um_scaffold_13373
Species: Thiobacillus denitrificans (66.67%)
3 1065 bp 58.78 4.08 91.55
RTP_01242018_0_2um_scaffold_6011
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 1764 bp 58.73 4.08 88.61
RTP_01242018_0_2um_scaffold_8485
Order: Hydrogenophilales (75%)
4 1396 bp 53.44 4.08 83.38
RTP_01242018_0_2um_scaffold_12591
Species: Thiobacillus denitrificans (50%)
2 1105 bp 62.35 4.07 87.96
RTP_01242018_0_2um_scaffold_3514
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2808 bp 65.88 4.06 99.36
RTP_01242018_0_2um_scaffold_6965
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1588 bp 61.84 4.06 98.61
RTP_01242018_0_2um_scaffold_11859
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1145 bp 57.82 4.06 96.94
RTP_01242018_0_2um_scaffold_9642
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1292 bp 63.24 4.06 88.93
RTP_01242018_0_2um_scaffold_6923
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1593 bp 58.88 4.05 94.54
RTP_01242018_0_2um_scaffold_8717
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1371 bp 58.28 4.05 92.12
RTP_01242018_0_2um_scaffold_2878
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3408 bp 64.20 4.05 92.34
RTP_01242018_0_2um_scaffold_5165
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 1998 bp 59.66 4.05 75.23
RTP_01242018_0_2um_scaffold_3738
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2632 bp 55.32 4.05 64.29
RTP_01242018_0_2um_scaffold_3781
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2602 bp 65.53 4.04 92.81
RTP_01242018_0_2um_scaffold_5135
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 2005 bp 55.86 4.04 83.94
RTP_01242018_0_2um_scaffold_8308
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1414 bp 65.21 4.03 97.81
RTP_01242018_0_2um_scaffold_11012
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1195 bp 64.94 4.02 93.39
RTP_01242018_0_2um_scaffold_2518
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 4027 bp 61.04 4.02 94.02
RTP_01242018_0_2um_scaffold_13035
Order: Hydrogenophilales (66.67%)
3 1082 bp 57.39 4.02 58.78
Displaying items 1001-1050 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.