ggKbase home page

RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 101-150 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_3856
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2551 bp 53.82 4.29 80.20
RTP_01242018_0_2um_scaffold_2769
Order: Hydrogenophilales (100%)
5 3583 bp 60.81 6.99 98.72
RTP_01242018_0_2um_scaffold_2519
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 4025 bp 57.91 6.78 97.04
RTP_01242018_0_2um_scaffold_4950
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2069 bp 54.08 6.38 79.89
RTP_01242018_0_2um_scaffold_3099
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3176 bp 59.76 5.20 98.90
RTP_01242018_0_2um_scaffold_3357
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2948 bp 59.43 4.68 80.19
RTP_01242018_0_2um_scaffold_2783
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3552 bp 61.43 5.79 97.04
RTP_01242018_0_2um_scaffold_3624
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2715 bp 58.97 6.19 91.38
RTP_01242018_0_2um_scaffold_3628
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2712 bp 60.91 3.76 96.46
RTP_01242018_0_2um_scaffold_2540
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3984 bp 61.85 5.84 91.64
RTP_01242018_0_2um_scaffold_2798
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3529 bp 58.88 5.06 96.15
RTP_01242018_0_2um_scaffold_2546
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3975 bp 62.77 5.70 69.74
RTP_01242018_0_2um_scaffold_6011
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 1764 bp 58.73 4.08 88.61
RTP_01242018_0_2um_scaffold_4210
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2361 bp 52.94 5.15 89.71
RTP_01242018_0_2um_scaffold_2807
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3520 bp 60.54 5.24 100.23
RTP_01242018_0_2um_scaffold_2561
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3932 bp 67.09 5.87 100.41
RTP_01242018_0_2um_scaffold_3146
Order: Hydrogenophilales (60%)
5 3138 bp 64.91 6.31 97.51
RTP_01242018_0_2um_scaffold_4231
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2350 bp 52.81 6.38 96.00
RTP_01242018_0_2um_scaffold_3918
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2518 bp 58.74 5.72 88.17
RTP_01242018_0_2um_scaffold_3663
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2686 bp 59.08 6.42 94.83
RTP_01242018_0_2um_scaffold_3152
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3131 bp 61.32 5.99 91.22
RTP_01242018_0_2um_scaffold_3922
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2516 bp 60.65 4.95 82.39
RTP_01242018_0_2um_scaffold_3156
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3123 bp 63.43 5.09 97.12
RTP_01242018_0_2um_scaffold_2838
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3482 bp 65.94 6.12 90.47
RTP_01242018_0_2um_scaffold_3177
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3108 bp 60.20 6.27 76.64
RTP_01242018_0_2um_scaffold_4270
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 2331 bp 59.24 4.76 87.52
RTP_01242018_0_2um_scaffold_2611
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3841 bp 61.60 5.70 91.38
RTP_01242018_0_2um_scaffold_4021
Order: Hydrogenophilales (60%)
5 2465 bp 57.16 4.99 50.99
RTP_01242018_0_2um_scaffold_3195
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 3091 bp 54.61 5.53 92.59
RTP_01242018_0_2um_scaffold_3202
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3086 bp 65.36 5.74 96.63
RTP_01242018_0_2um_scaffold_2627
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3822 bp 58.22 5.85 88.78
RTP_01242018_0_2um_scaffold_2893
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3394 bp 58.78 7.03 85.56
RTP_01242018_0_2um_scaffold_4299
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2317 bp 62.11 4.79 92.32
RTP_01242018_0_2um_scaffold_2389
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4278 bp 63.37 6.21 92.57
RTP_01242018_0_2um_scaffold_4315
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2313 bp 58.67 5.64 85.34
RTP_01242018_0_2um_scaffold_2915
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3361 bp 59.63 5.44 83.01
RTP_01242018_0_2um_scaffold_5201
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1987 bp 58.13 5.81 98.89
RTP_01242018_0_2um_scaffold_4321
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2310 bp 68.83 5.00 97.14
RTP_01242018_0_2um_scaffold_2406
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4242 bp 59.29 6.68 86.07
RTP_01242018_0_2um_scaffold_2408
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 4239 bp 62.14 5.45 93.06
RTP_01242018_0_2um_scaffold_2920
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3351 bp 54.49 5.01 91.14
RTP_01242018_0_2um_scaffold_5718
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 1826 bp 55.91 5.91 75.08
RTP_01242018_0_2um_scaffold_2923
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3346 bp 59.89 5.42 87.42
RTP_01242018_0_2um_scaffold_7792
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1474 bp 62.08 4.17 94.64
RTP_01242018_0_2um_scaffold_3244
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 3056 bp 64.69 5.64 99.74
RTP_01242018_0_2um_scaffold_3765
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2616 bp 62.84 5.85 89.33
RTP_01242018_0_2um_scaffold_2423
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 4209 bp 62.32 7.09 90.66
RTP_01242018_0_2um_scaffold_3514
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2808 bp 65.88 4.06 99.36
RTP_01242018_0_2um_scaffold_2939
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 3324 bp 54.75 5.14 76.90
RTP_01242018_0_2um_scaffold_2428
Order: Hydrogenophilales (50%)
4 4202 bp 61.59 4.71 87.60
Displaying items 101-150 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.