ggKbase home page

RTP_07252018_0_1um_scaffold_13358_1

Organism: RTP_07252018_0_1um_Bacteroidetes_45_6

partial RP 26 / 55 BSCG 27 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: 3..392

Top 3 Functional Annotations

Value Algorithm Source
TonB-dependent receptor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1L6_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 61.7
  • Coverage: 133.0
  • Bit_score: 173
  • Evalue 8.30e-41
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 61.7
  • Coverage: 133.0
  • Bit_score: 173
  • Evalue 2.30e-41
TonB-dependent receptor {ECO:0000313|EMBL:ACU02992.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.7
  • Coverage: 133.0
  • Bit_score: 173
  • Evalue 1.20e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 390
GGACAAACTGCCCAGTGGGTAAATGGCACTGGTCAGGCAGTGGGTATTGCACCTGATCAGTTGGCTGCCTTAAATGCCAATGCCACTATCTGGCAGCCCATCAAAAGTGCCGGTGCTTTCTATCCCAGTTCATGGGCCATTGAAAAAGGATCTTTCCTGCGGGTGAATAACCTCACTATTGGTTACACACTACCTTCTGCTACACTGGCTAAAATGAAGATCAATAAACTAAGGTTCTATTTCACCGCTAATAACCTGGCTGTATTTACCAGCTATACAGGATATGATCCGGAAGTGAGTGTGCGTAACAGTCCGCTTACCCCCGGCCTGGATTATTCAGCGTATCCCAAAAGCCGCAGTTTTATTTTCGGCGTAAATGCAACCTTTTAA
PROTEIN sequence
Length: 130
GQTAQWVNGTGQAVGIAPDQLAALNANATIWQPIKSAGAFYPSSWAIEKGSFLRVNNLTIGYTLPSATLAKMKINKLRFYFTANNLAVFTSYTGYDPEVSVRNSPLTPGLDYSAYPKSRSFIFGVNATF*