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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 251-300 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_11736
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 5303 bp 43.88 6.62 84.63
RTP_07252018_0_1um_scaffold_8040
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 5908 bp 44.11 4.60 92.47
RTP_07252018_0_1um_scaffold_34881
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 1797 bp 44.57 4.67 95.83
RTP_07252018_0_1um_scaffold_20790
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2559 bp 45.10 7.62 96.95
RTP_07252018_0_1um_scaffold_22299
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2443 bp 45.11 6.14 91.24
RTP_07252018_0_1um_scaffold_28724
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3239 bp 45.88 5.70 97.99
RTP_07252018_0_1um_scaffold_17910
Order: Sphingobacteriales (50%)
4 2832 bp 45.41 5.51 91.10
RTP_07252018_0_1um_scaffold_20030
Species: Dyadobacter fermentans (50%)
4 2622 bp 43.86 4.29 93.94
RTP_07252018_0_1um_scaffold_13358
Species: Niastella koreensis (50%)
4 3439 bp 44.98 5.36 87.93
RTP_07252018_0_1um_scaffold_10390
Species: Flavihumibacter sp. ZG627 (50%)
4 4040 bp 44.68 6.39 79.83
RTP_07252018_0_1um_scaffold_31723
Phylum: Bacteroidetes (75%)
4 3254 bp 45.54 4.56 92.93
RTP_07252018_0_1um_scaffold_12932
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3508 bp 46.12 5.73 92.53
RTP_07252018_0_1um_scaffold_16588
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2980 bp 46.07 5.08 91.71
RTP_07252018_0_1um_scaffold_20810
Order: Cytophagales (50%)
4 2557 bp 39.97 7.10 88.23
RTP_07252018_0_1um_scaffold_7122
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 5221 bp 45.01 6.32 86.71
RTP_07252018_0_1um_scaffold_21666
Species: Anditalea andensis (50%)
4 4337 bp 43.30 5.26 99.47
RTP_07252018_0_1um_scaffold_8836
Order: Sphingobacteriales (50%)
4 4961 bp 44.57 5.53 79.28
RTP_07252018_0_1um_scaffold_19604
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3509 bp 45.20 6.37 86.69
RTP_07252018_0_1um_scaffold_13372
Species: Pedobacter heparinus (50%)
4 3437 bp 45.21 7.90 97.59
RTP_07252018_0_1um_scaffold_6149
Species: Pedobacter heparinus (75%)
4 5764 bp 46.04 6.12 96.34
RTP_07252018_0_1um_scaffold_12174
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3642 bp 46.05 7.45 95.06
RTP_07252018_0_1um_scaffold_15622
Species: Niastella koreensis (50%)
4 4105 bp 45.99 5.19 95.30
RTP_07252018_0_1um_scaffold_4800
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 6813 bp 44.58 6.27 90.71
RTP_07252018_0_1um_scaffold_8329
Species: Flavihumibacter solisilvae (50%)
4 4694 bp 43.97 6.65 95.74
RTP_07252018_0_1um_scaffold_19100
Order: Sphingobacteriales (75%)
4 2706 bp 43.94 6.49 91.13
RTP_07252018_0_1um_scaffold_30084
Phylum: Bacteroidetes (50%)
4 1996 bp 43.89 6.24 94.39
RTP_07252018_0_1um_scaffold_23541
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2359 bp 43.45 6.74 93.73
RTP_07252018_0_1um_scaffold_14510
Phylum: Bacteroidetes (100%)
4 3254 bp 46.00 4.38 85.46
RTP_07252018_0_1um_scaffold_13383
Species: Haliscomenobacter hydrossis (50%)
4 3434 bp 44.32 6.77 97.50
RTP_07252018_0_1um_scaffold_26983
Order: Cytophagales (50%)
4 3429 bp 41.79 4.94 89.41
RTP_07252018_0_1um_scaffold_20572
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2578 bp 43.56 4.71 68.66
RTP_07252018_0_1um_scaffold_17686
Species: Pedobacter sp. V48 (50%)
4 2856 bp 47.72 5.51 99.68
RTP_07252018_0_1um_scaffold_11015
Species: Runella slithyformis (50%)
4 3886 bp 47.35 6.99 93.10
RTP_07252018_0_1um_scaffold_18457
Order: Cytophagales (50%)
4 2774 bp 44.52 7.35 88.57
RTP_07252018_0_1um_scaffold_13906
Order: Cytophagales (50%)
4 3349 bp 47.15 6.67 95.13
RTP_07252018_0_1um_scaffold_21439
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3239 bp 44.27 5.33 97.53
RTP_07252018_0_1um_scaffold_10953
Species: Pedobacter sp. NL19 (50%)
4 3901 bp 42.89 6.77 94.13
RTP_07252018_0_1um_scaffold_4835
Species: Niastella koreensis (50%)
4 6775 bp 43.22 7.62 89.40
RTP_07252018_0_1um_scaffold_7163
Order: Sphingobacteriales (75%)
4 5199 bp 44.55 5.40 94.69
RTP_07252018_0_1um_scaffold_16380
Order: Sphingobacteriales (50%)
4 3004 bp 47.00 6.34 76.27
RTP_07252018_0_1um_scaffold_34184
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3206 bp 44.23 5.47 87.77
RTP_07252018_0_1um_scaffold_41690
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2326 bp 45.14 4.90 91.06
RTP_07252018_0_1um_scaffold_18482
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2771 bp 44.50 6.28 95.92
RTP_07252018_0_1um_scaffold_50011
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2598 bp 44.61 5.37 89.61
RTP_07252018_0_1um_scaffold_13675
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3386 bp 45.95 5.80 83.46
RTP_07252018_0_1um_scaffold_13931
Order: Sphingobacteriales (75%)
4 3345 bp 46.34 5.61 90.04
RTP_07252018_0_1um_scaffold_10709
Species: Haliscomenobacter hydrossis (50%)
4 3959 bp 43.22 5.15 91.92
RTP_07252018_0_1um_scaffold_15159
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3163 bp 47.68 5.50 84.32
RTP_07252018_0_1um_scaffold_23587
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2356 bp 44.65 5.86 97.79
RTP_07252018_0_1um_scaffold_16140
Species: Niastella koreensis (50%)
4 3033 bp 44.35 4.60 97.73
Displaying items 251-300 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.