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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 251-300 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_41594
Species: Pedobacter sp. BAL39 (100%)
1 1588 bp 43.77 6.23 59.13
RTP_07252018_0_1um_scaffold_19569
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 3902 bp 45.21 6.23 93.41
RTP_07252018_0_1um_scaffold_5034
Phylum: Bacteroidetes (87.5%)
8 8318 bp 43.16 6.22 88.54
RTP_07252018_0_1um_scaffold_38888
Genus: Flavihumibacter (66.67%)
3 1667 bp 45.65 6.21 85.66
RTP_07252018_0_1um_scaffold_4683
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 6934 bp 44.23 6.21 79.56
RTP_07252018_0_1um_scaffold_10601
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
7 3987 bp 44.70 6.21 89.24
RTP_07252018_0_1um_scaffold_24527
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 3196 bp 44.84 6.20 79.51
RTP_07252018_0_1um_scaffold_34934
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
5 3050 bp 45.70 6.20 96.69
RTP_07252018_0_1um_scaffold_10974
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3897 bp 41.75 6.20 92.76
RTP_07252018_0_1um_scaffold_24441
Species: Niastella koreensis (66.67%)
3 2297 bp 44.32 6.20 89.33
RTP_07252018_0_1um_scaffold_41273
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1597 bp 45.34 6.20 85.85
RTP_07252018_0_1um_scaffold_21327
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2516 bp 45.31 6.20 82.39
RTP_07252018_0_1um_scaffold_16371
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 3005 bp 43.86 6.19 91.15
RTP_07252018_0_1um_scaffold_7974
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 6055 bp 47.78 6.19 91.96
RTP_07252018_0_1um_scaffold_38414
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2740 bp 45.26 6.19 92.96
RTP_07252018_0_1um_scaffold_16783
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2958 bp 41.78 6.19 76.27
RTP_07252018_0_1um_scaffold_25639
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2228 bp 46.14 6.19 99.51
RTP_07252018_0_1um_scaffold_4467
Phylum: Bacteroidetes (57.14%)
7 7158 bp 45.33 6.18 91.66
RTP_07252018_0_1um_scaffold_9152
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 6041 bp 46.61 6.18 92.32
RTP_07252018_0_1um_scaffold_3721
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
8 10235 bp 45.94 6.17 93.74
RTP_07252018_0_1um_scaffold_16414
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 4549 bp 45.46 6.17 88.44
RTP_07252018_0_1um_scaffold_12284
Order: Sphingobacteriales (66.67%)
3 3623 bp 46.34 6.17 95.23
RTP_07252018_0_1um_scaffold_36986
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1727 bp 44.99 6.17 89.46
RTP_07252018_0_1um_scaffold_38503
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1679 bp 46.46 6.16 96.13
RTP_07252018_0_1um_scaffold_21720
Species: Pedobacter heparinus (50%)
2 2485 bp 45.19 6.16 89.94
RTP_07252018_0_1um_scaffold_23471
Species: Chitinophaga pinensis (50%)
2 2363 bp 47.02 6.16 99.28
RTP_07252018_0_1um_scaffold_20516
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2582 bp 45.27 6.16 87.61
RTP_07252018_0_1um_scaffold_3683
Phylum: Bacteroidetes (66.67%)
9 8875 bp 41.15 6.15 99.08
RTP_07252018_0_1um_scaffold_15735
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 4121 bp 45.28 6.15 91.87
RTP_07252018_0_1um_scaffold_11988
Order: Sphingobacteriales (50%)
6 6329 bp 45.98 6.14 92.48
RTP_07252018_0_1um_scaffold_21640
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2492 bp 42.74 6.14 79.82
RTP_07252018_0_1um_scaffold_22299
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 2443 bp 45.11 6.14 91.24
RTP_07252018_0_1um_scaffold_10395
Species: Arcticibacter svalbardensis (66.67%)
3 4039 bp 45.01 6.13 95.82
RTP_07252018_0_1um_scaffold_34534
Phylum: Bacteroidetes (100%)
3 1810 bp 44.14 6.13 94.97
RTP_07252018_0_1um_scaffold_6149
Species: Pedobacter heparinus (75%)
4 5764 bp 46.04 6.12 96.34
RTP_07252018_0_1um_scaffold_20614
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2574 bp 44.72 6.12 81.93
RTP_07252018_0_1um_scaffold_6056
Phylum: Bacteroidetes (62.5%)
8 5822 bp 42.39 6.11 83.01
RTP_07252018_0_1um_scaffold_13485
Phylum: Bacteroidetes (100%)
3 3417 bp 45.60 6.10 84.55
RTP_07252018_0_1um_scaffold_8465
Phylum: Bacteroidetes (66.67%)
6 4648 bp 43.59 6.10 76.87
RTP_07252018_0_1um_scaffold_41187
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1600 bp 47.00 6.09 97.31
RTP_07252018_0_1um_scaffold_35509
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1776 bp 45.33 6.08 82.43
RTP_07252018_0_1um_scaffold_9520
Phylum: Bacteroidetes (83.33%)
6 5185 bp 45.92 6.08 81.29
RTP_07252018_0_1um_scaffold_12825
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3529 bp 45.40 6.08 95.38
RTP_07252018_0_1um_scaffold_10893
Species: Runella slithyformis (60%)
5 4722 bp 45.89 6.07 95.62
RTP_07252018_0_1um_scaffold_4818
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
5 6792 bp 44.70 6.07 93.37
RTP_07252018_0_1um_scaffold_22612
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2420 bp 47.60 6.07 98.43
RTP_07252018_0_1um_scaffold_19793
Phylum: Bacteroidetes (83.33%)
6 3831 bp 44.37 6.07 88.18
RTP_07252018_0_1um_scaffold_6408
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (81.82%)
11 9723 bp 44.98 6.05 85.59
RTP_07252018_0_1um_scaffold_22107
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3346 bp 43.16 6.05 78.36
RTP_07252018_0_1um_scaffold_29824
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2007 bp 45.49 6.05 97.01
Displaying items 251-300 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.