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RTP_07252018_0_1um_Bacteroidetes_45_6

In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Displaying items 351-400 of 632 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_5598
Phylum: Bacteroidetes (100%)
7 6151 bp 45.29 5.88 88.38
RTP_07252018_0_1um_scaffold_15541
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3114 bp 45.73 5.88 91.04
RTP_07252018_0_1um_scaffold_7679
Species: Niastella koreensis (66.67%)
3 4958 bp 42.74 5.87 96.93
RTP_07252018_0_1um_scaffold_7256
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 5160 bp 43.68 5.87 89.13
RTP_07252018_0_1um_scaffold_3927
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 7888 bp 46.40 5.86 89.76
RTP_07252018_0_1um_scaffold_35764
Order: Sphingobacteriales (66.67%)
3 1767 bp 43.80 5.86 99.49
RTP_07252018_0_1um_scaffold_23587
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2356 bp 44.65 5.86 97.79
RTP_07252018_0_1um_scaffold_39863
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 1638 bp 45.18 5.86 83.88
RTP_07252018_0_1um_scaffold_9960
Phylum: Bacteroidetes (57.14%)
7 4155 bp 45.94 5.85 90.04
RTP_07252018_0_1um_scaffold_11491
Order: Sphingobacteriales (66.67%)
3 3780 bp 45.90 5.83 95.48
RTP_07252018_0_1um_scaffold_3729
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
8 8158 bp 44.84 5.83 86.27
RTP_07252018_0_1um_scaffold_12251
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3630 bp 46.36 5.83 95.45
RTP_07252018_0_1um_scaffold_9699
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 4227 bp 46.01 5.82 93.19
RTP_07252018_0_1um_scaffold_20868
Order: Sphingobacteriales (100%)
3 2551 bp 41.63 5.82 87.73
RTP_07252018_0_1um_scaffold_6749
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
9 5413 bp 42.32 5.82 84.91
RTP_07252018_0_1um_scaffold_42045
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1575 bp 44.13 5.81 86.86
RTP_07252018_0_1um_scaffold_23085
Species: Niastella koreensis (50%)
4 3563 bp 42.52 5.81 73.45
RTP_07252018_0_1um_scaffold_15440
Phylum: Bacteroidetes (80%)
5 3126 bp 43.79 5.81 81.83
RTP_07252018_0_1um_scaffold_4911
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 6707 bp 44.43 5.81 91.56
RTP_07252018_0_1um_scaffold_15398
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 3131 bp 46.60 5.80 95.91
RTP_07252018_0_1um_scaffold_13675
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3386 bp 45.95 5.80 83.46
RTP_07252018_0_1um_scaffold_24388
Genus: Flavobacterium (50%)
4 2301 bp 43.68 5.80 94.92
RTP_07252018_0_1um_scaffold_5550
Order: Sphingobacteriales (66.67%)
9 6177 bp 44.26 5.80 92.04
RTP_07252018_0_1um_scaffold_38443
Species: Polaribacter sp. Hel1_85 (50%)
2 1681 bp 41.70 5.80 80.49
RTP_07252018_0_1um_scaffold_31933
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1913 bp 42.29 5.80 90.17
RTP_07252018_0_1um_scaffold_6346
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 5652 bp 44.62 5.79 92.09
RTP_07252018_0_1um_scaffold_17439
Order: Sphingobacteriales (66.67%)
3 2881 bp 47.62 5.78 81.53
RTP_07252018_0_1um_scaffold_17445
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2881 bp 45.30 5.78 82.78
RTP_07252018_0_1um_scaffold_16128
Phylum: Bacteroidetes (100%)
3 3035 bp 48.04 5.78 94.20
RTP_07252018_0_1um_scaffold_40886
Species: Solitalea canadensis (100%)
1 1608 bp 46.83 5.78 100.00
RTP_07252018_0_1um_scaffold_23412
Order: Sphingobacteriales (66.67%)
3 2367 bp 47.32 5.77 98.99
RTP_07252018_0_1um_scaffold_10542
Species: Niastella koreensis (50%)
4 4001 bp 47.11 5.77 94.93
RTP_07252018_0_1um_scaffold_10320
Phylum: Bacteroidetes (80%)
5 4056 bp 44.50 5.77 87.87
RTP_07252018_0_1um_scaffold_32782
Species: Niastella koreensis (66.67%)
3 1877 bp 43.58 5.75 97.18
RTP_07252018_0_1um_scaffold_6978
Phylum: Bacteroidetes (66.67%)
3 5292 bp 45.35 5.75 95.46
RTP_07252018_0_1um_scaffold_15520
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 4724 bp 46.25 5.75 95.07
RTP_07252018_0_1um_scaffold_34737
Species: Flammeovirgaceae bacterium 311 (50%)
2 1802 bp 39.73 5.74 96.89
RTP_07252018_0_1um_scaffold_12932
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3508 bp 46.12 5.73 92.53
RTP_07252018_0_1um_scaffold_18706
Order: Sphingobacteriales (66.67%)
3 2747 bp 45.54 5.73 93.59
RTP_07252018_0_1um_scaffold_20094
Order: Sphingobacteriales (66.67%)
3 2617 bp 45.85 5.73 100.31
RTP_07252018_0_1um_scaffold_6466
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 5578 bp 44.94 5.73 90.84
RTP_07252018_0_1um_scaffold_26158
Species: Niastella koreensis (66.67%)
3 2199 bp 44.61 5.73 94.54
RTP_07252018_0_1um_scaffold_29030
Species: Niastella koreensis (50%)
2 2045 bp 47.09 5.72 84.65
RTP_07252018_0_1um_scaffold_29044
Phylum: Bacteroidetes (66.67%)
3 2044 bp 43.69 5.72 89.24
RTP_07252018_0_1um_scaffold_19719
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2650 bp 44.68 5.72 94.08
RTP_07252018_0_1um_scaffold_9360
Order: Sphingobacteriales (50%)
4 4326 bp 45.19 5.72 96.53
RTP_07252018_0_1um_scaffold_7552
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 5007 bp 47.89 5.72 95.03
RTP_07252018_0_1um_scaffold_28724
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3239 bp 45.88 5.70 97.99
RTP_07252018_0_1um_scaffold_25954
Order: Sphingobacteriales (66.67%)
3 2211 bp 47.35 5.70 82.50
RTP_07252018_0_1um_scaffold_38313
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1685 bp 47.54 5.70 96.50
Displaying items 351-400 of 632 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.