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SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_Methanoperedens_plus_43_3

SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_unknown_42_3
In projects: SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META  |  MpSRVP  |  circ_rRNA_paper_related

Consensus taxonomy:

Description

SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_concoct_359_sub (J)

Displaying items 1-50 of 51 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_3356_L 271 241568 bp 43.35 5.72 88.41
contains a provirus Lingdong Shi (9/27/24)
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_24291_L 151 128917 bp 42.29 2.23 84.04
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_4523_L 150 103128 bp 41.72 2.41 82.39
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_11725_L 148 104313 bp 42.22 2.80 85.72
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_14989_L 132 90231 bp 43.13 1.94 85.66
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_11578_L 130 100247 bp 39.60 2.11 80.88
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_4201_L 129 103026 bp 42.36 2.07 86.37
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_4217_L 127 92644 bp 42.77 2.14 85.72
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_27594_L 109 80084 bp 41.21 2.52 83.01
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_26763_L 106 75265 bp 42.38 2.44 84.70
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_27425_L 105 76962 bp 42.71 2.42 87.41
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_18428_L 104 69964 bp 42.56 1.62 82.42
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_22336_L 100 74473 bp 42.49 3.30 77.72
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_3870_L 99 79191 bp 45.99 1.94 87.33
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_26740_L 96 80180 bp 41.65 2.75 73.82
CRISPR - bacterial and archaeal. MGE? Jill Banfield (3/4/24)
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_35200_L
Domain: Archaea (52.75%)
91 70015 bp 42.58 2.06 84.73
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_16165_L 87 68326 bp 41.57 2.87 83.99
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_9291_L 86 63081 bp 41.54 1.83 82.43
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_37253_L
Domain: Archaea (53.01%)
83 56596 bp 41.95 2.45 75.96
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_42189_L 82 62352 bp 40.93 2.01 85.18
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_17234_L 80 49768 bp 44.62 2.21 79.23
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_11002_L 78 57855 bp 43.49 3.06 86.00
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_36288_L 77 51022 bp 41.64 2.19 70.05
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_28604_L 75 51207 bp 42.09 2.84 87.50
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_32277_L 75 58548 bp 44.59 2.59 82.74
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_2940_L 73 61548 bp 40.87 1.95 72.28
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_27400_L 70 61102 bp 42.37 2.57 82.54
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_35199_L 69 55051 bp 42.23 3.66 89.44
has sequential homologs of Ruby992 but no 990/991 ID'd (yet). Also has Cas protein region Jill Banfield (4/11/24)
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_35205_L 68 61682 bp 42.16 1.75 88.22
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_428_L 68 53288 bp 43.11 2.79 75.60
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_540_L 65 48751 bp 44.76 3.27 86.47
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_35366_L 63 58469 bp 42.07 1.64 81.41
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_17233_L 63 53722 bp 44.43 3.05 87.21
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_30403_L 61 41848 bp 41.57 2.51 77.56
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_7070_L 58 39942 bp 41.76 2.21 77.05
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_20365_L 54 37154 bp 39.94 2.56 77.50
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_41963_L 53 40664 bp 39.25 1.80 75.70
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_34103_L 52 35265 bp 42.24 1.73 81.11
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_42143_L
Domain: Archaea (50.98%)
51 35237 bp 42.36 1.99 75.21
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_17942_L 50 33721 bp 42.59 1.72 87.04
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_46666_L 49 33368 bp 42.17 1.89 88.10
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_23708_L 49 43246 bp 40.94 2.12 91.60
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_31697_L 49 47206 bp 40.57 1.89 77.91
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_7709_L 48 33547 bp 42.25 2.66 90.77
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_7632_L 45 38277 bp 43.28 1.86 89.33
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_46875_L 42 32420 bp 43.12 2.60 88.16
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_16170_L 40 34144 bp 39.58 2.24 86.97
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_44071_L 36 23093 bp 43.47 1.95 84.23
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_14461_L 36 28442 bp 44.47 3.10 80.18
SR-VP_9_9_2021_34_2B_1_4m_PACBIO-HIFI_HIFIASM-META_11886_L 34 51852 bp 45.28 2.46 96.04
Displaying items 1-50 of 51 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.