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SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_concoct_75_sub

SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_Archaea_48_2
In projects: SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META  |  circ_rRNA_paper_related

Consensus taxonomy: Archaea

Displaying 48 items
contig # features sequence size GC content (%) Cov Coding Density (%)
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_5775_L 136 113586 bp 45.59 2.13 61.35
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_21266_L
Domain: Archaea (51.97%)
127 104046 bp 47.57 1.60 70.47
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_3006_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (53.66%)
123 96271 bp 47.30 2.42 75.04
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_14130_L
Domain: Archaea (60.55%)
109 82969 bp 47.08 1.40 71.34
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_30490_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (53.54%)
99 71571 bp 46.76 2.40 77.54
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_10223_L 90 74794 bp 48.41 1.92 74.86
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_23087_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
80 70648 bp 49.06 1.39 80.76
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_21727_L 77 52159 bp 45.62 1.96 71.19
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_3964_L
Domain: Archaea (61.33%)
75 63438 bp 47.42 1.51 77.01
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_11149_L 75 60232 bp 46.87 2.37 69.27
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_15635_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (66.22%)
74 52475 bp 48.05 2.06 73.10
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_18983_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (53.62%)
69 40669 bp 48.80 2.05 71.16
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_8198_L 69 57638 bp 44.73 1.54 77.96
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_32221_L 67 44880 bp 45.99 2.94 79.04
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_28188_L
Phylum: Bathyarchaeota (62.69%)
67 55846 bp 46.16 1.61 79.98
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_17536_L
Phylum: Bathyarchaeota (57.58%)
66 51337 bp 47.03 1.24 78.97
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_32673_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (56.06%)
66 48319 bp 46.68 1.44 79.45
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_33993_L 65 50888 bp 48.13 2.23 70.63
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_10933_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (66.67%)
63 50738 bp 47.46 1.78 85.32
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_22389_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (58.33%)
60 39533 bp 49.40 1.22 78.87
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_34245_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (54.24%)
59 42459 bp 50.24 1.06 70.23
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_19774_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (68.97%)
58 45218 bp 47.99 2.20 77.36
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_28255_L 57 40774 bp 47.83 2.19 71.90
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_31493_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (57.89%)
57 40215 bp 47.90 1.38 81.26
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_2586_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (56.14%)
57 59285 bp 51.22 3.91 82.57
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_1358_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (59.26%)
54 48599 bp 47.01 2.14 85.89
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_28356_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (59.26%)
54 34005 bp 49.48 1.39 70.77
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_9946_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (84.31%)
51 38435 bp 47.63 2.10 75.53
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_17766_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (56.25%)
48 37956 bp 47.15 2.30 66.13
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_9434_L 48 41077 bp 46.14 1.94 66.38
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_26804_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (63.83%)
47 35935 bp 46.93 1.80 88.68
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_20951_L
Domain: Archaea (72.34%)
47 46196 bp 48.04 1.59 81.16
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_12398_L
Domain: Archaea (60.87%)
46 44592 bp 46.63 2.42 75.29
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_9410_L
Domain: Archaea (52.17%)
46 36864 bp 45.18 1.97 66.87
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_4504_L 44 44513 bp 50.43 2.25 76.44
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_20463_L
Order: Ignavibacteriales (62.79%)
43 32636 bp 52.77 1.26 81.27
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_33485_L 41 37271 bp 47.34 1.73 76.07
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_26511_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
40 33056 bp 48.86 1.61 71.14
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_18155_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (60%)
40 32427 bp 47.82 2.51 83.73
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_5242_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (63.16%)
38 33274 bp 48.09 2.69 88.41
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_12044_L
Phylum: Bathyarchaeota (59.46%)
37 37054 bp 50.79 3.38 85.92
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_35547_L
Domain: Archaea (50%)
36 42356 bp 49.92 2.68 76.20
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_16830_L 29 28807 bp 44.77 3.50 72.51
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_22423_L 27 22767 bp 45.51 2.78 82.67
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_12684_L 26 19596 bp 46.35 4.83 81.35
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_8497_L
Species: RBG_13_Bathyarchaeota_46_16b_curated (71.43%)
21 17514 bp 48.13 3.73 82.10
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_35653_L 19 23652 bp 48.14 3.57 85.86
SR-VP_9_9_2021_81_5A_0_75m_PACBIO-HIFI_HIFIASM-META_29166_L 17 31080 bp 50.22 3.24 88.68
Displaying 48 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.