ggKbase home page

SR2-17_Biohub_180515_Verrucomicrobia_65_12_b

SR2-17_Biohub_180515_Verrucomicrobia_65_12
In projects: SR2-17_Biohub_180515  |  SR2-18_drep99_filtered  |  all_nc_groundwater_genomes

Consensus taxonomy: Verrucomicrobia  →  Bacteria

Description

CONCOCT_167_sub

Displaying items 1-50 of 311 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SR-2_scaffold_141_1017945
Domain: Bacteria (82.28%)
79 103999 bp 65.25 14.58 88.23
SR-2_scaffold_141_2519004
Domain: Bacteria (92.31%)
65 69622 bp 63.30 12.53 93.17
SR-2_scaffold_141_1731312
Domain: Bacteria (88.33%)
60 66907 bp 64.03 12.26 91.01
SR-2_scaffold_141_2033014
Species: Pedosphaera parvula (68.42%)
57 49026 bp 61.90 12.76 90.97
SR-2_scaffold_141_2505023
Domain: Bacteria (92.98%)
57 68571 bp 65.88 12.45 94.93
SR-2_scaffold_141_19087
Phylum: Verrucomicrobia (57.14%)
49 65777 bp 64.96 12.75 89.05
SR-2_scaffold_141_450664
Domain: Bacteria (89.36%)
47 64213 bp 64.55 12.07 90.21
SR-2_scaffold_141_852316
Phylum: Verrucomicrobia (62.79%)
43 43217 bp 63.92 11.70 89.40
SR-2_scaffold_141_370764
Class: Verrucomicrobiae (52.38%)
42 54766 bp 65.45 13.10 89.19
SR-2_scaffold_141_354987
Species: Pedosphaera parvula (66.67%)
42 49517 bp 64.82 12.80 89.79
SR-2_scaffold_141_2066822
Species: Pedosphaera parvula (54.76%)
42 55474 bp 64.60 13.77 88.18
SR-2_scaffold_141_570012
Domain: Bacteria (97.5%)
40 55935 bp 65.31 12.75 86.96
SR-2_scaffold_141_1246932
Species: Pedosphaera parvula (65.79%)
38 39164 bp 63.85 13.11 87.86
SR-2_scaffold_141_3923649
Phylum: Verrucomicrobia (62.16%)
37 44430 bp 65.04 11.46 85.99
SR-2_scaffold_141_2171592
Phylum: Verrucomicrobia (62.16%)
37 39400 bp 64.79 12.53 92.14
SR-2_scaffold_141_3206603
Species: Pedosphaera parvula (50%)
36 39260 bp 63.63 13.15 91.41
SR-2_scaffold_141_2474911
Class: Verrucomicrobiae (51.43%)
35 40238 bp 65.43 13.11 89.61
SR-2_scaffold_141_133204
Phylum: Verrucomicrobia (57.14%)
35 32202 bp 63.40 12.71 84.57
SR-2_scaffold_141_869762
Species: Pedosphaera parvula (52.94%)
34 40395 bp 64.17 12.41 87.24
SR-2_scaffold_141_4120662
Species: Pedosphaera parvula (70.59%)
34 45876 bp 65.40 13.36 92.40
SR-2_scaffold_141_30460
Domain: Bacteria (90.91%)
33 42577 bp 63.97 11.97 95.52
SR-2_scaffold_141_2151715
Domain: Bacteria (83.87%)
31 36669 bp 63.21 11.85 90.05
SR-2_scaffold_141_3275819
Phylum: Verrucomicrobia (54.84%)
31 45097 bp 65.08 11.99 87.35
SR-2_scaffold_141_49884
Domain: Bacteria (64.52%)
31 52364 bp 65.62 13.24 92.17
SR-2_scaffold_141_3129728
Species: Pedosphaera parvula (61.29%)
31 34329 bp 65.16 12.86 88.34
SR-2_scaffold_141_1166905
Phylum: Verrucomicrobia (51.61%)
31 38141 bp 65.01 12.98 85.71
SR-2_scaffold_141_147124
Phylum: Verrucomicrobia (50%)
30 41112 bp 64.32 11.88 85.27
SR-2_scaffold_141_1255663
Phylum: Verrucomicrobia (56.67%)
30 34966 bp 64.57 11.60 85.42
SR-2_scaffold_141_2147383
Domain: Bacteria (82.76%)
29 27846 bp 64.21 11.71 91.30
SR-2_scaffold_141_4092619
Species: Pedosphaera parvula (75%)
28 25789 bp 63.85 12.16 88.67
SR-2_scaffold_141_22333
Phylum: Verrucomicrobia (71.43%)
28 33837 bp 65.00 12.48 90.09
SR-2_scaffold_141_3926213
Species: Pedosphaera parvula (50%)
28 32023 bp 64.87 12.57 84.50
SR-2_scaffold_141_3054231
Species: Pedosphaera parvula (70.37%)
27 29042 bp 64.81 12.03 88.22
SR-2_scaffold_141_2129746
Domain: Bacteria (96.15%)
26 43633 bp 65.13 11.88 91.14
SR-2_scaffold_141_641378
Species: Pedosphaera parvula (50%)
26 32565 bp 64.91 14.20 90.66
SR-2_scaffold_141_1114566
Phylum: Verrucomicrobia (65.38%)
26 28703 bp 63.81 11.65 85.69
SR-2_scaffold_141_1959246
Phylum: Verrucomicrobia (53.85%)
26 28488 bp 63.78 13.01 80.30
SR-2_scaffold_141_2797587
Species: Pedosphaera parvula (54.17%)
24 25841 bp 64.67 13.00 87.00
SR-2_scaffold_141_1908203
Phylum: Verrucomicrobia (56.52%)
23 19217 bp 63.17 12.17 86.91
SR-2_scaffold_141_472423
Species: Pedosphaera parvula (73.91%)
23 29429 bp 65.88 12.80 83.84
SR-2_scaffold_141_1535198
Phylum: Verrucomicrobia (56.52%)
23 23650 bp 65.07 13.13 84.77
SR-2_scaffold_141_2657986
Phylum: Verrucomicrobia (73.91%)
23 30692 bp 64.96 13.19 88.58
SR-2_scaffold_141_320038
Phylum: Verrucomicrobia (54.55%)
22 34219 bp 65.62 13.17 91.24
SR-2_scaffold_141_2007649
Phylum: Verrucomicrobia (63.64%)
22 23148 bp 63.38 11.90 84.51
SR-2_scaffold_141_4145117
Phylum: Verrucomicrobia (59.09%)
22 24805 bp 64.60 13.24 85.23
SR-2_scaffold_141_1875774
Species: Pedosphaera parvula (50%)
22 21060 bp 64.23 12.09 87.44
SR-2_scaffold_141_1999943
Domain: Bacteria (90.48%)
21 27226 bp 65.07 11.73 89.39
SR-2_scaffold_141_2407142
Domain: Bacteria (95.24%)
21 32180 bp 64.78 12.16 88.38
SR-2_scaffold_141_3699433
Class: Verrucomicrobiae (52.38%)
21 30614 bp 63.77 13.17 85.51
SR-2_scaffold_141_3301094
Phylum: Verrucomicrobia (57.14%)
21 23210 bp 64.03 11.65 87.58
Displaying items 1-50 of 311 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.