ggKbase home page
Advanced Search
Search Help

SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 351-400 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_16323
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1156 bp 51.21 14.79 31.92
sw_10_scaffold_16350 3 1155 bp 62.77 39.48 31.95
sw_10_scaffold_15879 3 2065 bp 55.25 5.13 31.96
sw_10_scaffold_15852 2 1182 bp 52.79 6.51 31.98
sw_10_scaffold_16715 2 1135 bp 50.13 6.26 31.98
sw_10_scaffold_19628 2 1936 bp 50.67 6.10 32.08
sw_10_scaffold_10712 1 1533 bp 36.33 7.57 32.09
sw_10_scaffold_13366
Species: GWA2_Bacteroidetes_31_9_curated (50%)
2 2654 bp 36.70 4.82 32.10
sw_10_scaffold_14483
Species: Halalkalicoccus jeotgali (50%)
2 1713 bp 67.02 50.35 32.22
sw_10_scaffold_9486
Order: Halobacteriales (66.67%)
3 1656 bp 64.61 40.40 32.25
sw_10_scaffold_19121
Species: Haloarcula vallismortis (50%)
2 1031 bp 65.37 8.44 32.30
sw_10_scaffold_4736
Species: Haloarcula japonica (50%)
2 2582 bp 52.13 6.78 32.30
sw_10_scaffold_12693
Species: Flexibacter litoralis (50%)
2 1374 bp 36.68 5.31 32.31
sw_10_scaffold_10941
Species: Amblyomma maculatum (50%)
2 1513 bp 53.80 7.01 32.32
sw_10_scaffold_19138 2 1030 bp 56.21 16.02 32.33
sw_10_scaffold_10781 2 2151 bp 51.56 7.07 32.36
sw_10_scaffold_14759 2 1242 bp 49.84 7.17 32.37
sw_10_scaffold_15974 1 1175 bp 47.32 8.68 32.43
sw_10_scaffold_25772
Species: Thermococcus sp. AM4 (100%)
1 1276 bp 49.06 5.64 32.45
sw_10_scaffold_24182
Species: Halococcus salifodinae (50%)
2 1413 bp 58.39 8.99 32.48
sw_10_scaffold_17317 2 1108 bp 54.69 5.42 32.49
sw_10_scaffold_15489 2 1200 bp 42.00 7.83 32.50
sw_10_scaffold_16194 1 1163 bp 37.66 25.62 32.50
sw_10_scaffold_18805 1 1043 bp 58.96 9.78 32.50
sw_10_scaffold_27484
Species: Halosimplex carlsbadense (50%)
2 1384 bp 70.30 15.53 32.51
sw_10_scaffold_23519 2 1596 bp 49.69 5.58 32.52
sw_10_scaffold_13653 3 2103 bp 51.02 5.42 32.53
sw_10_scaffold_8625 3 2699 bp 51.17 8.93 32.57
sw_10_scaffold_7497 2 3164 bp 48.86 7.62 32.62
sw_10_scaffold_14316
Species: Desulfococcus multivorans (50%)
2 1268 bp 62.46 19.24 32.65
sw_10_scaffold_10707 2 1534 bp 48.44 6.13 32.66
sw_10_scaffold_30553 2 1471 bp 36.17 6.25 32.83
sw_10_scaffold_16268
Species: Phytophthora parasitica (100%)
1 1159 bp 54.53 7.08 32.87
sw_10_scaffold_7678 3 1906 bp 48.90 10.23 32.90
sw_10_scaffold_14227
Species: Natrialba taiwanensis (50%)
2 1274 bp 55.02 22.92 32.97
sw_10_scaffold_23736 1 1492 bp 48.79 7.31 32.98
sw_10_scaffold_12841 1 1364 bp 55.35 6.30 32.99
sw_10_scaffold_15874 1 1180 bp 56.61 5.93 33.05
sw_10_scaffold_8324
Species: Aquimarina atlantica (50%)
2 1809 bp 35.43 5.64 33.17
sw_10_scaffold_33231 3 1732 bp 49.77 6.52 33.26
sw_10_scaffold_15525
Species: uncultured archaeon A07HB70 (50%)
2 1199 bp 62.80 23.27 33.28
sw_10_scaffold_20286 2 1809 bp 44.39 6.74 33.33
sw_10_scaffold_17264
Species: Clostridium tetanomorphum (100%)
1 2232 bp 62.95 7.17 33.33
sw_10_scaffold_13262
Species: Synechococcus sp. PCC 7502 (50%)
2 2997 bp 43.18 38.00 33.43
sw_10_scaffold_11511
Species: Halococcus saccharolyticus (100%)
2 1462 bp 52.94 13.34 33.45
sw_10_scaffold_28990
Species: uncultured archaeon A07HR60 (50%)
2 1336 bp 55.54 6.29 33.46
sw_10_scaffold_19619
Species: Haloarcula japonica (100%)
1 1010 bp 53.76 6.63 33.56
sw_10_scaffold_15064 3 1224 bp 58.33 6.78 33.58
sw_10_scaffold_14480 2 1258 bp 56.20 7.15 33.62
sw_10_scaffold_25268
Species: Halorubrum lipolyticum (100%)
1 1427 bp 35.18 4.91 33.64
Displaying items 351-400 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.