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SW_10_Nanohaloarchaea_43_6

In projects: SW_10  |  archaea_ggkbase

Consensus taxonomy: Nanohaloarchaea  →  Nanohaloarchaeota  →  Archaea

Taxonomy override: Nanohaloarchaea

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 5.86 Longest contig: 15.13 Kbp Bin length: 541.43 Kbp GC content: 42.84 %
Contigs count: 262 Features count: 873 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 25 / 55 MC: 7 BSCG 13 / 51 MC: 1 ASCG 21 / 38 MC: 10
Displaying items 1-50 of 262 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_2580
Class: Nanohaloarchaea (54.55%)
22 15131 bp 42.94 6.16 91.42
sw_10_scaffold_1411
Species: Candidatus Nanosalina sp. J07AB43 (55.56%)
18 13358 bp 42.14 6.96 89.16
sw_10_scaffold_2132
Class: Nanohaloarchaea (55.56%)
9 7431 bp 43.83 7.08 90.27
sw_10_scaffold_1901
Class: Nanohaloarchaea (57.14%)
7 6580 bp 42.87 6.25 88.63
sw_10_scaffold_1724
Class: Nanohaloarchaea (50%)
4 5721 bp 39.31 7.20 79.60
sw_10_scaffold_4308
Class: Nanohaloarchaea (57.14%)
14 5352 bp 44.88 6.15 88.00
sw_10_scaffold_2838
Class: Nanohaloarchaea (50%)
8 5246 bp 40.53 6.58 97.50
sw_10_scaffold_2635
Species: Candidatus Nanosalina sp. J07AB43 (50%)
8 5061 bp 43.57 6.94 95.67
sw_10_scaffold_2015
Species: Candidatus Nanosalinarum sp. J07AB56 (50%)
6 5019 bp 44.01 6.28 92.89
sw_10_scaffold_1612
Class: Nanohaloarchaea (57.14%)
7 4972 bp 44.49 7.08 96.48
sw_10_scaffold_1709 9 4790 bp 43.61 6.39 97.64
sw_10_scaffold_3772
Class: Nanohaloarchaea (50%)
10 4651 bp 42.46 5.57 96.24
sw_10_scaffold_3785
Species: Candidatus Nanosalina sp. J07AB43 (50%)
6 4645 bp 41.77 5.40 86.22
sw_10_scaffold_1829
Species: Candidatus Nanosalinarum sp. J07AB56 (100%)
1 4581 bp 39.88 5.26 99.93
sw_10_scaffold_6775
Class: Nanohaloarchaea (80%)
5 4318 bp 41.99 4.79 93.45
sw_10_scaffold_5790
Species: Candidatus Nanosalinarum sp. J07AB56 (75%)
4 4303 bp 42.20 6.83 89.38
sw_10_scaffold_2149
Species: Candidatus Nanosalina sp. J07AB43 (57.14%)
7 4122 bp 45.29 6.07 95.71
sw_10_scaffold_2757
Species: Candidatus Nanosalinarum sp. J07AB56 (60%)
5 4103 bp 43.72 6.51 96.88
sw_10_scaffold_6248
Species: Candidatus Nanosalina sp. J07AB43 (83.33%)
6 4081 bp 41.83 5.64 62.85
sw_10_scaffold_7871 6 4051 bp 42.85 5.85 59.99
sw_10_scaffold_2296
Species: Candidatus Nanosalina sp. J07AB43 (62.5%)
8 3952 bp 43.62 6.12 91.52
sw_10_scaffold_3005
Class: Nanohaloarchaea (71.43%)
7 3952 bp 44.21 6.68 93.52
sw_10_scaffold_3830
Class: Nanohaloarchaea (66.67%)
3 3877 bp 40.50 7.02 99.28
sw_10_scaffold_3003
Species: Candidatus Nanosalinarum sp. J07AB56 (60%)
5 3852 bp 42.37 7.79 93.85
sw_10_scaffold_2403
Species: Candidatus Haloredivivus sp. G17 (66.67%)
6 3832 bp 45.15 5.90 96.14
sw_10_scaffold_2451
Class: Nanohaloarchaea (62.5%)
8 3794 bp 43.07 6.46 94.41
sw_10_scaffold_4752
Class: Nanohaloarchaea (60%)
5 3786 bp 42.82 6.92 100.24
sw_10_scaffold_6343
Class: Nanohaloarchaea (80%)
5 3745 bp 41.42 7.16 92.84
sw_10_scaffold_7457
Class: Nanohaloarchaea (66.67%)
6 3739 bp 44.56 6.55 93.39
sw_10_scaffold_2604
Species: Candidatus Nanosalina sp. J07AB43 (80%)
5 3663 bp 40.35 7.18 95.50
sw_10_scaffold_2910
Class: Nanohaloarchaea (50%)
8 3419 bp 44.95 5.73 84.32
sw_10_scaffold_2920
Species: Candidatus Haloredivivus sp. G17 (50%)
4 3410 bp 45.07 6.66 98.71
sw_10_scaffold_3012
Species: Candidatus Haloredivivus sp. G17 (50%)
8 3363 bp 45.38 6.93 76.81
sw_10_scaffold_3110
Species: Candidatus Nanosalina sp. J07AB43 (50%)
4 3305 bp 45.11 5.54 88.41
sw_10_scaffold_8240
Class: Nanohaloarchaea (50%)
4 3294 bp 44.11 6.83 95.90
sw_10_scaffold_3316
Species: Candidatus Haloredivivus sp. G17 (60%)
5 3186 bp 43.06 6.47 96.42
sw_10_scaffold_3349
Class: Nanohaloarchaea (60%)
5 3168 bp 42.46 7.48 96.50
sw_10_scaffold_9121
Class: Nanohaloarchaea (71.43%)
7 3135 bp 43.32 5.39 89.67
sw_10_scaffold_8837
Species: Candidatus Nanosalina sp. J07AB43 (50%)
6 2983 bp 43.25 6.20 98.46
sw_10_scaffold_5877
Species: Candidatus Haloredivivus sp. G17 (50%)
4 2971 bp 42.24 6.29 59.37
sw_10_scaffold_8933
Class: Nanohaloarchaea (66.67%)
6 2964 bp 43.72 4.79 96.86
sw_10_scaffold_5716
Species: Candidatus Nanosalina sp. J07AB43 (50%)
6 2940 bp 45.10 4.90 95.20
sw_10_scaffold_3841
Species: Candidatus Haloredivivus sp. G17 (50%)
4 2933 bp 40.61 5.69 79.47
sw_10_scaffold_7119
Class: Nanohaloarchaea (50%)
8 2909 bp 43.28 6.12 66.83
sw_10_scaffold_3892
Species: Candidatus Nanosalinarum sp. J07AB56 (66.67%)
3 2907 bp 40.42 6.71 97.52
sw_10_scaffold_4008
Species: Candidatus Nanosalinarum sp. J07AB56 (50%)
4 2855 bp 40.04 7.01 96.78
sw_10_scaffold_6469
Class: Nanohaloarchaea (60%)
5 2806 bp 43.48 6.84 90.45
sw_10_scaffold_4108
Species: Candidatus Haloredivivus sp. G17 (50%)
2 2805 bp 43.89 5.63 99.57
sw_10_scaffold_9911
Class: Nanohaloarchaea (50%)
4 2755 bp 39.78 5.48 79.06
sw_10_scaffold_4244
Species: Candidatus Haloredivivus sp. G17 (50%)
4 2749 bp 41.18 5.53 87.96
Displaying items 1-50 of 262 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.