ggKbase | organisms

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %

Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38

Displaying items 301-350 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_19147 Species: Micromonas pusilla (50%)	2	1030 bp	59.13	6.60	83.59
sw_10_scaffold_17052 Species: Ostreococcus tauri (50%)	2	1940 bp	53.61	5.88	87.22
sw_10_scaffold_9114 Species: Ostreococcus tauri (50%)	2	1701 bp	55.03	5.17	67.02
sw_10_scaffold_11086 Species: Micromonas pusilla (100%)	2	2356 bp	55.56	5.81	70.67
sw_10_scaffold_17056 Species: Micromonas sp. RCC299 (50%)	2	1120 bp	60.89	5.80	42.05
sw_10_scaffold_4508 Species: Ostreococcus 'lucimarinus' (50%)	2	2660 bp	56.05	6.95	47.48
sw_10_scaffold_13392 Species: Chlamydomonas reinhardtii (50%)	2	1325 bp	51.25	5.96	84.68
sw_10_scaffold_40636 Species: Chlorella variabilis (50%)	2	1039 bp	59.29	7.31	105.68
sw_10_scaffold_6121 Species: Volvox carteri (50%)	2	2190 bp	55.30	5.43	64.93
sw_10_scaffold_16598 Species: Micromonas pusilla (50%)	2	1141 bp	56.79	7.80	68.62
sw_10_scaffold_17562 Species: Volvox carteri (50%)	2	1968 bp	51.98	5.79	95.88
sw_10_scaffold_6353 Species: Monoraphidium neglectum (50%)	2	2141 bp	55.39	4.34	65.72
sw_10_scaffold_13855 Species: Monoraphidium neglectum (50%)	2	2373 bp	48.29	5.23	51.33
sw_10_scaffold_8198 Species: Ostreococcus tauri (50%)	2	3290 bp	53.56	6.63	84.71
sw_10_scaffold_10861 Species: Coccomyxa subellipsoidea (50%)	2	1519 bp	53.85	4.87	47.60
sw_10_scaffold_14779 Species: Micromonas sp. RCC299 (50%)	2	1241 bp	57.37	3.95	56.33
sw_10_scaffold_15953 Species: Micromonas pusilla (50%)	2	1727 bp	52.92	5.62	99.88
sw_10_scaffold_19157 Species: Micromonas pusilla (50%)	2	1511 bp	55.92	5.23	100.07
sw_10_scaffold_16833 Species: Coccomyxa subellipsoidea (50%)	2	1130 bp	62.57	6.64	73.27
sw_10_scaffold_42882 Species: Chlamydomonas reinhardtii (50%)	2	1108 bp	53.25	4.60	49.28
sw_10_scaffold_3868 Species: Coccomyxa subellipsoidea (50%)	2	2919 bp	57.25	6.47	96.61
sw_10_scaffold_7742 Species: Micromonas sp. RCC299 (50%)	2	1896 bp	53.22	5.27	65.03
sw_10_scaffold_13630 Species: Micromonas pusilla (50%)	2	1309 bp	54.77	5.81	93.96
sw_10_scaffold_13861 Species: Tetraselmis sp. GSL018 (50%)	2	1295 bp	61.39	6.64	70.89
sw_10_scaffold_19621 Species: Helicosporidium sp. ATCC 50920 (50%)	2	1737 bp	55.27	6.91	80.66
sw_10_scaffold_17800 Species: Bathycoccus prasinos (50%)	2	1087 bp	51.70	6.35	95.22
sw_10_scaffold_23743 Species: Micromonas pusilla (50%)	2	1474 bp	54.88	6.11	61.06
sw_10_scaffold_18222 Species: Micromonas sp. RCC299 (50%)	2	1068 bp	54.03	6.46	75.84
sw_10_scaffold_12946 Species: Coccomyxa subellipsoidea (50%)	2	1356 bp	54.50	8.33	93.81
sw_10_scaffold_18686 Species: Tetraselmis sp. GSL018 (100%)	2	1048 bp	53.63	6.01	79.29
sw_10_scaffold_11796 Species: Tetraselmis sp. GSL018 (50%)	2	1441 bp	54.55	7.15	74.32
sw_10_scaffold_11797 Species: Micromonas sp. RCC299 (50%)	2	1441 bp	54.13	5.41	79.53
sw_10_scaffold_16613 Species: Tetraselmis sp. GSL018 (50%)	2	1632 bp	57.48	6.37	91.91
sw_10_scaffold_25966 Species: Micromonas pusilla (50%)	2	1440 bp	61.25	6.60	93.54
sw_10_scaffold_12720 Species: Monoraphidium neglectum (50%)	2	1372 bp	52.70	5.83	59.26
sw_10_scaffold_9599 Species: Micromonas pusilla (50%)	2	1647 bp	53.92	4.68	47.36
sw_10_scaffold_13182 Species: Bathycoccus prasinos (100%)	2	1339 bp	55.12	6.80	45.93
sw_10_scaffold_17351 Species: Chlorella variabilis (50%)	2	1106 bp	56.96	5.15	62.66
sw_10_scaffold_3879 Species: Micromonas pusilla (50%)	2	2914 bp	55.66	6.45	99.35
sw_10_scaffold_20737 Species: Tetraselmis sp. GSL018 (50%)	2	1559 bp	58.95	7.06	79.47
sw_10_scaffold_19867 Species: Micromonas pusilla (50%)	2	1001 bp	53.85	5.99	73.13
sw_10_scaffold_7527 Species: Tetraselmis sp. GSL018 (100%)	2	2904 bp	52.44	5.72	98.55
sw_10_scaffold_13647 Species: Ostreococcus 'lucimarinus' (50%)	2	1308 bp	51.91	4.89	59.17
sw_10_scaffold_9372 Species: Ostreococcus 'lucimarinus' (50%)	2	1670 bp	55.21	5.63	60.90
sw_10_scaffold_16852 Species: Micromonas pusilla (50%)	2	1129 bp	48.98	6.73	47.83
sw_10_scaffold_11806 Species: Micromonas sp. RCC299 (50%)	2	1440 bp	54.17	5.49	68.33
sw_10_scaffold_15745 Species: Auxenochlorella protothecoides (50%)	2	1187 bp	52.57	6.23	37.91
sw_10_scaffold_7301 Species: Coccomyxa subellipsoidea (50%)	2	3024 bp	52.91	6.61	55.06
sw_10_scaffold_13882 Species: Micromonas pusilla (50%)	2	1293 bp	54.76	5.96	92.11
sw_10_scaffold_18469 Species: Micromonas sp. RCC299 (50%)	2	1057 bp	53.26	7.95	74.93

Displaying items 301-350 of 662 in total

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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