ggKbase | organisms

Advanced Search

SW_10_Chlorophyta_55_6

In projects: SW_10

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %

Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38

Displaying items 651-662 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_14953 Species: Micromonas sp. RCC299 (50%)	2	1230 bp	59.67	6.26	100.49
sw_10_scaffold_13428 Species: Micromonas pusilla (50%)	2	1900 bp	57.21	6.11	100.74
sw_10_scaffold_16516 Species: Monoraphidium neglectum (50%)	2	1960 bp	54.29	5.31	101.33
sw_10_scaffold_18317 Species: Monoraphidium neglectum (66.67%)	3	2572 bp	49.18	5.87	102.29
sw_10_scaffold_30040 Species: Volvox carteri (50%)	2	1282 bp	53.12	5.93	102.73
sw_10_scaffold_22609 Species: Micromonas sp. RCC299 (50%)	2	1653 bp	57.05	5.99	103.27
sw_10_scaffold_17471 Species: Ostreococcus 'lucimarinus' (50%)	2	1101 bp	64.31	6.27	103.27
sw_10_scaffold_11948 Species: Coccomyxa subellipsoidea (50%)	2	1428 bp	58.47	5.39	103.99
sw_10_scaffold_19182 Species: Ostreococcus tauri (50%)	2	1028 bp	55.93	6.03	104.77
sw_10_scaffold_40636 Species: Chlorella variabilis (50%)	2	1039 bp	59.29	7.31	105.68
sw_10_scaffold_16790 Genus: Micromonas (66.67%)	3	1652 bp	51.09	6.96	108.05
sw_10_scaffold_13610 Phylum: Chlorophyta (66.67%)	3	1311 bp	53.62	5.57	112.82

Displaying items 651-662 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.