ggKbase | organisms

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_10_UNK

Properties

Avg. coverage: 6.08 Longest contig: 7.50 Kbp Bin length: 1.16 Mbp GC content: 54.51 %

Contigs count: 662 Features count: 1220 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 4 BSCG 9 / 51 MC: 3 ASCG 8 / 38

Displaying items 351-400 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_19182 Species: Ostreococcus tauri (50%)	2	1028 bp	55.93	6.03	104.77
sw_10_scaffold_15518 Species: Chlamydomonas reinhardtii (50%)	2	1199 bp	55.46	6.92	71.81
sw_10_scaffold_2964 Species: Helicosporidium sp. ATCC 50920 (50%)	2	4689 bp	52.27	5.95	94.31
sw_10_scaffold_7538 Species: Bathycoccus prasinos (50%)	2	1926 bp	55.82	7.01	81.00
sw_10_scaffold_9150 Species: Micromonas sp. RCC299 (50%)	2	1697 bp	60.81	4.48	83.44
sw_10_scaffold_22797 Species: Chlorella variabilis (50%)	2	1451 bp	59.48	5.58	69.88
sw_10_scaffold_4095 Species: Bathycoccus prasinos (50%)	2	3505 bp	52.81	6.13	97.23
sw_10_scaffold_13428 Species: Micromonas pusilla (50%)	2	1900 bp	57.21	6.11	100.74
sw_10_scaffold_15271 Species: Micromonas sp. RCC299 (50%)	2	1653 bp	56.62	5.14	100.36
sw_10_scaffold_16864 Species: Ostreococcus 'lucimarinus' (50%)	2	1684 bp	55.94	6.65	51.66
sw_10_scaffold_15757 Species: Chlamydomonas reinhardtii (50%)	2	1186 bp	53.29	7.67	84.99
sw_10_scaffold_18479 Species: Micromonas sp. RCC299 (50%)	2	1057 bp	53.93	5.58	96.22
sw_10_scaffold_18060 Species: Tetraselmis sp. GSL018 (50%)	2	1075 bp	60.09	5.21	87.07
sw_10_scaffold_23887 Species: Chlamydomonas reinhardtii (50%)	2	1511 bp	51.69	5.10	92.52
sw_10_scaffold_12973 Species: Micromonas sp. RCC299 (50%)	2	1354 bp	59.08	4.51	53.18
sw_10_scaffold_15277 Species: Tetraselmis sp. GSL018 (50%)	2	1212 bp	56.93	6.02	95.54
sw_10_scaffold_15529 Species: Chlorella variabilis (50%)	2	1198 bp	51.84	6.76	76.88
sw_10_scaffold_8468 Species: Micromonas pusilla (50%)	2	1789 bp	54.11	6.54	98.43
sw_10_scaffold_12975 Species: Chlamydomonas reinhardtii (50%)	2	1354 bp	51.03	6.79	77.33
sw_10_scaffold_14357 Species: Micromonas pusilla (50%)	2	1266 bp	49.92	4.74	43.60
sw_10_scaffold_13667 Species: Ostreococcus 'lucimarinus' (50%)	2	1307 bp	54.40	5.66	70.70
sw_10_scaffold_15762 Species: Micromonas sp. RCC299 (50%)	2	1186 bp	54.22	6.32	97.13
sw_10_scaffold_17836 Species: Ostreococcus 'lucimarinus' (50%)	2	1085 bp	51.61	6.18	81.57
sw_10_scaffold_10902 Species: Micromonas sp. RCC299 (50%)	2	1516 bp	54.88	5.34	78.76
sw_10_scaffold_22851 Species: Micromonas sp. RCC299 (50%)	2	1584 bp	56.38	6.69	64.20
sw_10_scaffold_8702 Species: Micromonas pusilla (50%)	2	1755 bp	54.13	6.44	73.50
sw_10_scaffold_22852 Species: Micromonas pusilla (50%)	2	1443 bp	55.30	5.89	61.95
sw_10_scaffold_6860 Species: Monoraphidium neglectum (50%)	2	2043 bp	58.15	6.90	100.00
sw_10_scaffold_12749 Species: Volvox carteri (50%)	2	1370 bp	53.43	6.20	72.70
sw_10_scaffold_19661 Species: Volvox carteri (50%)	2	1008 bp	55.26	4.86	88.10
sw_10_scaffold_8244 Species: Micromonas pusilla (50%)	2	1819 bp	55.58	5.22	70.26
sw_10_scaffold_12520 Species: Ostreococcus tauri (50%)	2	2212 bp	51.99	6.24	55.06
sw_10_scaffold_16878 Species: Micromonas sp. RCC299 (50%)	2	2073 bp	53.79	5.16	51.23
sw_10_scaffold_18720 Species: Ostreococcus tauri (50%)	2	1047 bp	50.91	4.20	95.42
sw_10_scaffold_29738 Species: Tetraselmis sp. GSL018 (50%)	2	1374 bp	52.98	5.53	99.56
sw_10_scaffold_17382 Species: Ostreococcus tauri (50%)	2	1105 bp	54.30	7.06	57.56
sw_10_scaffold_16650 Species: Micromonas pusilla (50%)	2	1139 bp	61.46	5.71	79.54
sw_10_scaffold_7560 Species: Micromonas sp. RCC299 (50%)	2	1922 bp	54.21	5.31	73.05
sw_10_scaffold_8020 Species: Ostreococcus tauri (50%)	2	1853 bp	55.15	5.18	87.10
sw_10_scaffold_6409 Species: Coccomyxa subellipsoidea (50%)	2	2131 bp	51.20	6.34	58.28
sw_10_scaffold_10455 Species: Micromonas sp. RCC299 (50%)	2	1559 bp	51.96	7.31	81.40
sw_10_scaffold_3408 Species: Ostreococcus tauri (50%)	2	3140 bp	53.79	6.56	96.69
sw_10_scaffold_8948 Species: Micromonas sp. RCC299 (50%)	2	3235 bp	51.90	6.03	50.82
sw_10_scaffold_3260 Species: Tetraselmis sp. GSL018 (50%)	2	3217 bp	54.90	5.66	71.99
sw_10_scaffold_18084 Species: Micromonas sp. RCC299 (50%)	2	1634 bp	56.92	6.92	93.45
sw_10_scaffold_16242 Species: Chlorella variabilis (50%)	2	1161 bp	56.85	6.12	86.05
sw_10_scaffold_18504 Species: Micromonas sp. RCC299 (50%)	2	1816 bp	54.35	6.06	92.35
sw_10_scaffold_17122 Species: Auxenochlorella protothecoides (100%)	1	1117 bp	48.97	7.61	35.18
sw_10_scaffold_18736 Species: Chlorella variabilis (100%)	1	1046 bp	50.29	5.64	64.53
sw_10_scaffold_12999 Species: Micromonas pusilla (100%)	1	1351 bp	58.48	6.51	99.70

Displaying items 351-400 of 662 in total

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_Chlorophyta_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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