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SW_11_Halococcus_67_16

In projects: SW_11  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halococcus  →  Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 15.83 Longest contig: 7.34 Kbp Bin length: 781.31 Kbp GC content: 66.88 %
Contigs count: 421 Features count: 1099 rRNAs count: 0 tRNAs count: 7

Genome completeness

partial RP 15 / 55 MC: 3 BSCG 13 / 51 MC: 2 ASCG 20 / 38 MC: 1
Displaying items 201-250 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_9630
Species: Halococcus salifodinae (50%)
2 1462 bp 71.41 18.40 94.80
sw_11_scaffold_12644
Species: Halococcus saccharolyticus (50%)
2 1199 bp 65.14 11.26 59.05
sw_11_scaffold_16100
Species: Halococcus salifodinae (50%)
2 1004 bp 67.53 20.62 87.85
sw_11_scaffold_11494
Species: Halococcus saccharolyticus (100%)
2 1282 bp 63.49 16.69 92.20
sw_11_scaffold_7329
Species: Halococcus salifodinae (50%)
2 1775 bp 67.72 17.18 97.18
sw_11_scaffold_10111
Species: Halococcus salifodinae (100%)
2 1408 bp 67.90 14.20 90.77
sw_11_scaffold_6409
Species: Halococcus thailandensis (50%)
2 1948 bp 66.79 21.05 85.01
sw_11_scaffold_28746
Species: Halococcus saccharolyticus (50%)
2 1100 bp 66.55 18.18 85.64
sw_11_scaffold_3417
Species: Halococcus saccharolyticus (50%)
2 2972 bp 62.82 11.51 82.97
sw_11_scaffold_7102
Species: Halococcus salifodinae (50%)
2 1813 bp 70.49 18.70 72.48
sw_11_scaffold_14264
Species: Halococcus salifodinae (50%)
2 1098 bp 68.21 13.93 87.70
sw_11_scaffold_8948
Species: Halococcus hamelinensis (50%)
2 1546 bp 62.81 14.55 87.71
sw_11_scaffold_10348
Species: Halococcus salifodinae (100%)
2 1385 bp 67.29 14.44 93.79
sw_11_scaffold_7799
Species: Halococcus salifodinae (100%)
2 1699 bp 65.74 11.30 98.18
sw_11_scaffold_10584
Species: Halococcus saccharolyticus (50%)
2 1361 bp 67.30 19.47 85.75
sw_11_scaffold_14270
Species: Halococcus thailandensis (50%)
2 1098 bp 68.85 19.67 90.98
sw_11_scaffold_18388
Species: Halococcus salifodinae (100%)
2 1502 bp 68.64 14.91 73.50
sw_11_scaffold_11973
Species: Halococcus salifodinae (100%)
2 1245 bp 67.07 13.65 91.57
sw_11_scaffold_11743
Species: Halococcus salifodinae (50%)
2 1262 bp 67.04 16.24 70.60
sw_11_scaffold_7118
Species: Halococcus salifodinae (50%)
2 1809 bp 66.83 14.93 100.50
sw_11_scaffold_8041
Species: Halococcus salifodinae (50%)
2 1661 bp 65.38 13.43 83.62
sw_11_scaffold_5047
Species: Halococcus salifodinae (50%)
2 2297 bp 66.39 15.76 99.00
sw_11_scaffold_8504
Species: Halococcus saccharolyticus (100%)
2 1598 bp 66.15 18.15 83.17
sw_11_scaffold_13822
Species: Halococcus saccharolyticus (50%)
2 1858 bp 63.78 17.55 75.89
sw_11_scaffold_6669
Species: Halococcus salifodinae (100%)
2 2669 bp 63.77 14.54 72.95
sw_11_scaffold_10603
Species: Halococcus salifodinae (100%)
2 1359 bp 63.13 13.39 86.53
sw_11_scaffold_9665
Species: Halococcus salifodinae (50%)
2 1457 bp 69.05 15.92 93.07
sw_11_scaffold_14527
Species: Halococcus saccharolyticus (50%)
2 1082 bp 70.06 11.18 94.55
sw_11_scaffold_22575
Species: Halococcus salifodinae (50%)
2 1859 bp 64.34 18.02 90.69
sw_11_scaffold_1315
Species: Halococcus thailandensis (50%)
2 5341 bp 67.67 17.79 90.94
sw_11_scaffold_9215
Species: Halococcus salifodinae (50%)
2 1514 bp 70.54 15.72 92.93
sw_11_scaffold_10617
Species: Halococcus salifodinae (50%)
2 1358 bp 67.53 11.41 86.60
sw_11_scaffold_8068
Species: Halococcus thailandensis (50%)
2 2091 bp 69.63 11.05 91.68
sw_11_scaffold_14078
Species: Halococcus saccharolyticus (50%)
2 2882 bp 65.06 16.69 79.74
sw_11_scaffold_11083
Species: Halococcus hamelinensis (50%)
2 1317 bp 69.02 20.80 90.43
sw_11_scaffold_16156
Species: Halococcus saccharolyticus (50%)
2 1619 bp 67.57 16.24 91.54
sw_11_scaffold_30715
Species: Halococcus salifodinae (50%)
2 1067 bp 65.79 16.40 97.28
sw_11_scaffold_15006
Species: Halococcus salifodinae (100%)
2 1057 bp 67.17 12.49 88.27
sw_11_scaffold_15007
Species: Halococcus salifodinae (50%)
2 1057 bp 67.55 12.30 92.81
sw_11_scaffold_8770
Species: Halococcus saccharolyticus (50%)
2 1565 bp 65.05 15.34 100.06
sw_11_scaffold_8540
Species: Halococcus saccharolyticus (50%)
2 1593 bp 70.56 18.83 91.90
sw_11_scaffold_9000
Species: Halococcus salifodinae (100%)
2 1540 bp 65.58 15.58 73.25
sw_11_scaffold_11323
Species: Halococcus saccharolyticus (50%)
2 1298 bp 67.41 18.18 99.85
sw_11_scaffold_13398
Species: Halococcus saccharolyticus (50%)
2 1150 bp 70.43 18.17 95.22
sw_11_scaffold_9924
Species: Halococcus salifodinae (100%)
2 1430 bp 66.29 15.73 99.86
sw_11_scaffold_11555
Species: Halococcus saccharolyticus (50%)
2 1278 bp 66.74 17.53 85.68
sw_11_scaffold_9926
Species: Halococcus hamelinensis (50%)
2 1430 bp 69.58 16.22 97.55
sw_11_scaffold_12248
Species: Halococcus saccharolyticus (50%)
2 1224 bp 70.26 17.32 99.51
sw_11_scaffold_27724
Species: Halococcus hamelinensis (50%)
2 1137 bp 67.37 16.36 86.02
sw_11_scaffold_6702
Species: Halococcus saccharolyticus (50%)
2 1892 bp 69.98 19.29 99.74
Displaying items 201-250 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.