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SW_11_Gammaproteobacteria_65_8

In projects: SW_11

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Proteobacteria

Metagenomic Context

Parent: SW_11_UNK

Properties

Avg. coverage: 8.06 Longest contig: 9.18 Kbp Bin length: 593.26 Kbp GC content: 65.46 %
Contigs count: 348 Features count: 852 rRNAs count: 0 tRNAs count: 12

Genome completeness

partial RP 21 / 55 MC: 3 BSCG 23 / 51 MC: 2 ASCG 4 / 38 MC: 1
Displaying items 201-250 of 348 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_7194
Species: Spiribacter salinus (50%)
2 1797 bp 64.61 8.40 85.98
sw_11_scaffold_12511
Species: Myxococcus xanthus (50%)
2 1207 bp 64.95 6.96 78.29
sw_11_scaffold_7195
Species: Afipia felis (50%)
2 1797 bp 65.55 10.02 98.16
sw_11_scaffold_11591
Species: Thioflavicoccus mobilis (50%)
2 1274 bp 67.27 8.63 94.90
sw_11_scaffold_11592
Species: Thioalkalivibrio sulfidiphilus (50%)
2 1274 bp 64.29 11.22 88.07
sw_11_scaffold_22889
Species: Pseudomonas alcaligenes (50%)
2 1397 bp 67.29 9.45 75.81
sw_11_scaffold_9506
Species: Thioalkalivibrio sulfidiphilus (100%)
2 1478 bp 65.29 7.44 99.46
sw_11_scaffold_32994
Species: Lutibaculum baratangense (50%)
2 1086 bp 67.50 8.01 92.82
sw_11_scaffold_18735
Species: RBG_16_Gamma2_64_11_curated (50%)
2 1838 bp 62.13 7.40 42.76
sw_11_scaffold_7437
Species: Ralstonia sp. PBA (50%)
2 1757 bp 66.59 5.86 101.42
sw_11_scaffold_6747
Species: GWC2_Geobacteraceae_55_20_curated (50%)
2 1883 bp 66.60 8.87 91.61
sw_11_scaffold_14138
Species: Methylophaga thiooxydans (50%)
2 1106 bp 66.73 8.68 88.97
sw_11_scaffold_20728
Species: Desulfovibrio magneticus (50%)
2 1458 bp 61.59 5.56 63.58
sw_11_scaffold_12762
Species: Thioploca ingrica (50%)
2 1192 bp 68.29 8.31 95.13
sw_11_scaffold_33078
Species: Nitrosococcus halophilus (50%)
2 1161 bp 64.25 7.75 80.62
sw_11_scaffold_7907
Species: Gammaproteobacteria bacterium MFB021 (50%)
2 1683 bp 63.81 9.98 67.02
sw_11_scaffold_14147
Species: Solemya velum gill symbiont (50%)
2 1540 bp 66.10 7.92 97.40
sw_11_scaffold_13692
Species: Thiobacillus prosperus (50%)
2 1133 bp 64.17 8.38 100.62
sw_11_scaffold_8378
Species: uncultured Thiohalocapsa sp. PB-PSB1 (50%)
2 1615 bp 65.02 7.37 94.92
sw_11_scaffold_13234
Species: uncultured gamma proteobacterium (50%)
2 1161 bp 61.84 6.29 62.79
sw_11_scaffold_21851
Species: Sulfuricella denitrificans (50%)
2 1674 bp 64.87 6.57 55.02
sw_11_scaffold_13235
Species: Pelobacter carbinolicus (50%)
2 1663 bp 66.57 7.22 92.00
sw_11_scaffold_12777
Species: Lutibaculum baratangense (50%)
2 1191 bp 67.76 7.14 100.25
sw_11_scaffold_28145
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
2 1210 bp 66.45 7.44 79.59
sw_11_scaffold_31327
Species: Osedax symbiont Rs2 (50%)
2 1115 bp 62.15 5.92 104.13
sw_11_scaffold_23034
Species: RHI_Gammaproteobacteria_63_22 (50%)
2 1449 bp 65.08 6.35 89.03
sw_11_scaffold_24283
Species: Pseudomonas stutzeri (50%)
2 1514 bp 63.34 7.33 53.10
sw_11_scaffold_14396
Species: Firmicutes bacterium CAG:24 (50%)
2 1089 bp 60.42 4.59 62.53
sw_11_scaffold_10249
Species: Pseudomonas resinovorans (50%)
2 1394 bp 64.63 6.10 92.32
sw_11_scaffold_12093
Species: Thioalkalivibrio sulfidiphilus (50%)
2 1235 bp 66.23 8.50 100.08
sw_11_scaffold_12324
Species: Methylophaga lonarensis (50%)
2 1219 bp 63.58 6.23 48.73
sw_11_scaffold_28202
Species: Thiobacillus prosperus (50%)
2 1186 bp 63.91 6.58 71.33
sw_11_scaffold_8625
Species: Parvularcula bermudensis (50%)
2 1582 bp 65.61 8.15 86.47
sw_11_scaffold_14405
Species: Pseudomonas stutzeri (50%)
2 1089 bp 67.22 6.89 95.04
sw_11_scaffold_13951
Species: Castellaniella defragrans (100%)
2 1117 bp 65.71 6.09 87.29
sw_11_scaffold_8634
Species: Marinobacter manganoxydans (50%)
2 1581 bp 64.52 9.17 94.12
sw_11_scaffold_18931
Species: Pseudomonas sp. CMAA1215 (50%)
2 1587 bp 63.83 7.44 54.25
sw_11_scaffold_11418
Species: Gynuella sunshinyii (50%)
2 1794 bp 62.99 9.75 64.38
sw_11_scaffold_7947
Species: Halomonas boliviensis (50%)
2 1678 bp 67.94 7.39 54.53
sw_11_scaffold_13726
Species: Marinobacter nanhaiticus (50%)
2 1132 bp 67.93 8.48 71.02
sw_11_scaffold_18942
Species: Thiocapsa marina (50%)
2 1576 bp 66.50 8.82 53.11
sw_11_scaffold_13268
Species: Desulfocapsa sulfexigens (50%)
2 1819 bp 66.30 8.52 100.11
sw_11_scaffold_17269
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
2 1391 bp 64.13 7.76 101.58
sw_11_scaffold_14421
Species: Nitrosococcus oceani (50%)
2 1088 bp 61.95 9.01 88.79
sw_11_scaffold_10970
Species: Desulfovibrio sp. U5L (50%)
2 1327 bp 62.09 6.48 77.77
sw_11_scaffold_15581
Species: endosymbiont of unidentified scaly snail isolate Monju (50%)
2 1028 bp 65.18 6.61 95.43
sw_11_scaffold_15582
Species: endosymbiont of unidentified scaly snail isolate Monju (50%)
2 1028 bp 65.86 6.03 83.17
sw_11_scaffold_25711
Species: Alkalilimnicola ehrlichii (50%)
2 1236 bp 62.70 7.04 97.57
sw_11_scaffold_15817
Species: Syntrophobacter fumaroxidans (50%)
2 1645 bp 67.42 8.51 67.11
sw_11_scaffold_13283
Species: Ectothiorhodospira sp. PHS-1 (50%)
2 1158 bp 68.13 7.51 84.97
Displaying items 201-250 of 348 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.