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sw_12_scaffold_1779_4

Organism: SW_12_Viridiplantae_56_8

partial RP 27 / 55 MC: 9 BSCG 13 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: comp(3031..4947)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Capsella rubella RepID=R0GC11_9BRAS similarity UNIREF
DB: UNIREF100
  • Identity: 41.0
  • Coverage: 641.0
  • Bit_score: 465
  • Evalue 8.90e-128
Uncharacterized protein {ECO:0000313|EMBL:EOA33141.1}; TaxID=81985 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; similarity UNIPROT
DB: UniProtKB
  • Identity: 41.0
  • Coverage: 641.0
  • Bit_score: 465
  • Evalue 1.20e-127
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 40.0
  • Coverage: 612.0
  • Bit_score: 451
  • Evalue 3.80e-124

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Taxonomy

Capsella rubella → Capsella → Brassicales → rosids → Streptophyta → Viridiplantae

Sequences

DNA sequence
Length: 1917
GTGAGATCAACATGGGAGGCTCACGCAGAGGCGCAGACGGAAGTGCAGAAGCAAGCAGAGACAAGGGGCGGGCGAGCGCTGCGCGAAGCGGTAGGTGAGGGCGGGTCGAGAAAGCTCGAGCCAGAAGCTCTCGAGGAGAATGATCTGGTGGTGCACCGTGATGTTGGTGTCGCACGAGTGGAAGCGCTGGAGCACGGGCGCTCCAGGAAGACGGGCCGCAAGCAGCGGTATGCGAAACTGCGCTTCGCTGATGGTGCCGCCCGTGTGCCCTTCTCAAAGGCGCCCTCCGTCCTCTATCGCTATGGCGAAGACGAGGCGCAACATGTTGCACTCGGACGTCTCCAGGACCGCTCCTCATGGCTGCGCAAAGTCGAGTCCGCTCGCAAAGTCGTTCAAGCTCAGGTGGCCTCCCTTTTGCAGCTCCACCGCGAGCGCATGCGCACCGACCGCCAACCTTATCCCTCGCCGGAGCCCGAGCTCGAGCGGCAGTTCAACATGGCTTTCCCCTTCGAGCTCACTGATGACCAGAAAAAGGCCGTGAACGAGATCCAGGCCGATCTTTCCGCCTCCAAGCCCATGGACCGCCTGCTCATCGGCGATGTTGGCTTCGGCAAAACCGAAGTTGCTGCTCGTGCCGTCTTCCGCGCCGTTTCCACCGGCAACCGGGTCATGCTACTCGCTCCTACTGCAGTGCTTGCGAAACAGCACTACGAGTCATTCAGATCCCGCTTTGAACCGCTTGGATTCGAAGTTGCACTCCTTTCGCGCTACCAGACGGAAAAAGAAGCCAACAATATCCGACGTAAAGCGTCTAAAGGGCTCATTCCGCTTGTCGTTGGCACACACTCTCTCCTTTCTGACAAGATGTCCCACGAGCATCTTTCGCTGCTAATTGTTGATGAGGAACAGCGCTTCGGCGTCAAGCAGAAGGAAAAGATTAAGCAAGCTCGCAGGAATCTGGACGTCCTCATGCTCACTGCAACTCCCATTCCACGCACGCTACAGTTGAGTATGAAAGGCATTCGCGACGTTTCTGTGCTACAGACAGCTCCTGAGAGTCGACAGCCGATCGACACATGGGTCGGTTCCTACAGCGACGATGCAGTGGCCAAAGCCATCGCTTACGAGATAAACCGCGGTGGACAAGTCCTCTATGTCATTCCACGGATCGGCACAATCGAGTTTGAGGACCGCCCGCTTGAGCTGCAAAATATGCTCCGCCGCATGCAAAATATAGACGTGTCAATTGCAGTCGCGCATGGGCAGCAGAGAGCCCACGAGCTTGACAATGCCATGCAGCGATTTCAGTCTGGGGAGAGCTCCATCCTGATAGCGACCGCGATTGTTGAGAATGGTCTCGATGTTCCAGCGGTCAATACACTCATCGTCGAGGATGCTCACAACTTTGGCCTAGCTCAGATGTATCAGCTGAGAGGACGTGTTGGCCGACGTGAGGAACAAGCCTACGCGCTGTTAACATATCCCCAAAACGTAGAGCTGACGCAGAAGGCGGTAAACAGATTACGTGCGATTGAGGAGTGCTGCAATCTGGGCGATGGCTTCGCGATTGCTAAGTACGATGCGAGCATCCGGGGCGGGGGGTCGCTCTTTGGCACCGAGCAGTCGGGAAGCTCACAAGGCCTTGGAGCGGAAATGTACACGGAAATGCTTGTGACTGAGTTAGAACGCGCCGAACGGTTACAGATGCCATCAGTCAAGCTGAATGATGTTGCTATCAAATTAAGCGGTATTCATCCGAGGATACCACCTGGTGCAGCCAGTGCACAAGCTGGGATGCCTCCCAGTGAGATTGAACGCTTTGAACAGCAGGTGCTTTCCAAAGCGGGTAATGGCGTCGACGAGCTAAATCAGGTGTCCAAAAGCATATCAGAGCGCTTTGGACAAGTGCCCGAGTAA
PROTEIN sequence
Length: 639
VRSTWEAHAEAQTEVQKQAETRGGRALREAVGEGGSRKLEPEALEENDLVVHRDVGVARVEALEHGRSRKTGRKQRYAKLRFADGAARVPFSKAPSVLYRYGEDEAQHVALGRLQDRSSWLRKVESARKVVQAQVASLLQLHRERMRTDRQPYPSPEPELERQFNMAFPFELTDDQKKAVNEIQADLSASKPMDRLLIGDVGFGKTEVAARAVFRAVSTGNRVMLLAPTAVLAKQHYESFRSRFEPLGFEVALLSRYQTEKEANNIRRKASKGLIPLVVGTHSLLSDKMSHEHLSLLIVDEEQRFGVKQKEKIKQARRNLDVLMLTATPIPRTLQLSMKGIRDVSVLQTAPESRQPIDTWVGSYSDDAVAKAIAYEINRGGQVLYVIPRIGTIEFEDRPLELQNMLRRMQNIDVSIAVAHGQQRAHELDNAMQRFQSGESSILIATAIVENGLDVPAVNTLIVEDAHNFGLAQMYQLRGRVGRREEQAYALLTYPQNVELTQKAVNRLRAIEECCNLGDGFAIAKYDASIRGGGSLFGTEQSGSSQGLGAEMYTEMLVTELERAERLQMPSVKLNDVAIKLSGIHPRIPPGAASAQAGMPPSEIERFEQQVLSKAGNGVDELNQVSKSISERFGQVPE*