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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 451-500 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_2726 10 7273 bp 55.15 7.34 76.23
sw_4_scaffold_1068
Class: Halobacteria (70%)
10 8971 bp 56.97 28.84 85.11
sw_4_scaffold_2282
Species: Halorhabdus tiamatea (50%)
10 7217 bp 60.75 11.92 92.07
sw_4_scaffold_1483 10 7693 bp 47.89 11.63 83.17
sw_4_scaffold_8262
Order: Halobacteriales (60%)
10 5060 bp 63.42 40.08 83.12
sw_4_scaffold_2393
Genus: Halococcus (50%)
10 5839 bp 60.85 19.31 81.54
sw_4_scaffold_550
Order: Cytophagales (50%)
10 15491 bp 59.65 19.69 87.71
sw_4_scaffold_919
Order: Halobacteriales (50%)
10 6498 bp 55.96 10.77 82.92
sw_4_scaffold_2395
Domain: Archaea (50%)
10 7076 bp 66.75 13.10 77.67
sw_4_scaffold_1092 10 9169 bp 41.05 21.81 95.60
sw_4_scaffold_2615
Class: Oscillatoriophycideae (50%)
10 8093 bp 50.38 22.12 75.06
sw_4_scaffold_2397 10 6492 bp 40.10 6.67 93.25
sw_4_scaffold_436
Phylum: Cyanobacteria (50%)
10 9998 bp 58.70 17.02 88.61
sw_4_scaffold_5285 10 6493 bp 55.71 6.85 62.42
sw_4_scaffold_782
Order: Halobacteriales (70%)
10 8365 bp 71.94 43.50 85.00
sw_4_scaffold_805
Species: Salinibacter ruber (80%)
10 8833 bp 64.97 19.16 80.70
sw_4_scaffold_4596 10 4904 bp 41.54 25.20 65.33
sw_4_scaffold_690
Phylum: Cyanobacteria (70%)
10 7653 bp 46.31 18.35 83.42
sw_4_scaffold_2505
Class: Halobacteria (70%)
10 8079 bp 70.21 44.60 84.59
sw_4_scaffold_4136 10 2914 bp 43.62 63.35 76.63
sw_4_scaffold_7131
Order: Halobacteriales (70%)
10 10451 bp 62.98 13.22 89.13
sw_4_scaffold_3909 10 3012 bp 47.88 5.54 89.44
sw_4_scaffold_11167 10 4557 bp 59.32 9.44 81.17
sw_4_scaffold_7135
Order: Halobacteriales (70%)
10 6623 bp 62.93 26.52 71.30
sw_4_scaffold_2507
Order: Bacteroidetes Order II. Incertae sedis (50%)
10 6876 bp 59.60 55.05 75.00
sw_4_scaffold_1578
Order: Halobacteriales (70%)
10 9214 bp 63.54 35.23 77.88
sw_4_scaffold_806 10 8551 bp 50.75 9.29 61.71
sw_4_scaffold_1002 10 8418 bp 54.17 17.15 52.53
sw_4_scaffold_1924
Order: Natrialbales (50%)
10 9809 bp 64.67 12.06 90.22
sw_4_scaffold_461
Species: halophilic archaeon DL31 (50%)
10 9652 bp 67.80 23.07 91.04
sw_4_scaffold_991
Class: Halobacteria (60%)
10 8853 bp 61.50 23.19 82.45
sw_4_scaffold_5301
Genus: Natronomonas (50%)
10 10134 bp 70.28 36.82 66.70
sw_4_scaffold_876
Domain: Bacteria (60%)
10 7975 bp 65.59 43.75 88.48
sw_4_scaffold_853 10 7743 bp 58.01 18.48 54.71
sw_4_scaffold_1049
Genus: Natronomonas (60%)
10 9168 bp 69.93 18.49 84.42
sw_4_scaffold_1072
Phylum: Cyanobacteria (80%)
10 6013 bp 48.26 35.84 83.30
sw_4_scaffold_646
Domain: Bacteria (60%)
10 8413 bp 61.55 14.96 70.21
sw_4_scaffold_3173
Species: Halococcus salifodinae (50%)
10 4959 bp 57.27 36.52 73.62
sw_4_scaffold_352
Species: Halococcus hamelinensis (50%)
10 11134 bp 58.72 16.16 94.98
sw_4_scaffold_3719
Domain: Bacteria (60%)
10 9972 bp 47.88 12.65 80.29
sw_4_scaffold_670 10 9034 bp 54.44 13.16 97.17
sw_4_scaffold_2521
Species: Natronomonas pharaonis (60%)
10 9212 bp 71.15 43.06 85.03
sw_4_scaffold_3524
Domain: Bacteria (60%)
10 4342 bp 61.93 19.23 82.77
sw_4_scaffold_2522
Class: Halobacteria (70%)
10 6015 bp 63.03 21.17 77.41
sw_4_scaffold_4632
Order: Halobacteriales (80%)
10 8067 bp 67.86 18.12 89.55
sw_4_scaffold_2310
Class: Halobacteria (60%)
10 7645 bp 56.82 12.26 78.25
sw_4_scaffold_1282
Class: Halobacteria (70%)
10 11688 bp 61.82 15.23 86.91
sw_4_scaffold_510
Domain: Bacteria (100%)
10 13206 bp 61.13 19.10 85.71
sw_4_scaffold_833 10 10558 bp 38.08 7.15 84.14
sw_4_scaffold_2897
Genus: Natronomonas (60%)
10 7917 bp 69.09 39.33 80.07
Displaying items 451-500 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.