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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 251-300 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_16456
Species: Halosimplex carlsbadense (100%)
1 1139 bp 50.83 4.74 99.82
sw_4_scaffold_13000
Species: marine sediment metagenome (50%)
2 1982 bp 42.33 4.74 91.27
sw_4_scaffold_22975 4 1476 bp 44.65 4.74 94.51
sw_4_scaffold_17642 2 1077 bp 41.88 4.74 62.67
sw_4_scaffold_18547 3 1032 bp 38.57 4.75 82.56
sw_4_scaffold_17001
Species: Stanieria cyanosphaera (50%)
2 1725 bp 41.91 4.75 61.04
sw_4_scaffold_10096
Species: Natronolimnobius innermongolicus (50%)
2 1641 bp 51.19 4.75 92.50
sw_4_scaffold_13806
Species: Chryseobacterium formosense (50%)
2 1306 bp 51.91 4.75 99.69
sw_4_scaffold_14761 3 1243 bp 59.69 4.75 89.78
sw_4_scaffold_11601
Species: marine sediment metagenome (100%)
1 1491 bp 43.33 4.76 100.00
sw_4_scaffold_14829
Species: bacterium UASB14 (100%)
1 1239 bp 35.67 4.76 88.14
sw_4_scaffold_38973 1 1050 bp 38.10 4.76 60.00
sw_4_scaffold_17741
Species: Natronolimnobius innermongolicus (50%)
2 1072 bp 49.91 4.76 82.00
sw_4_scaffold_14837 4 1238 bp 51.70 4.77 80.69
sw_4_scaffold_9939
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1657 bp 39.35 4.77 96.68
sw_4_scaffold_15192
Species: Halobacterium salinarum (100%)
1 1215 bp 56.54 4.77 99.75
sw_4_scaffold_18189
Species: Halorubrum coriense (50%)
2 1049 bp 38.80 4.77 97.24
sw_4_scaffold_16595 3 2012 bp 38.62 4.77 93.19
sw_4_scaffold_16234
Species: Haloarcula sp. CBA1115 (50%)
2 1151 bp 47.09 4.78 93.05
sw_4_scaffold_9819
Species: Indibacter alkaliphilus (100%)
1 1673 bp 54.99 4.78 99.88
sw_4_scaffold_19168 1 1004 bp 60.96 4.78 99.80
sw_4_scaffold_9146
Species: Chroococcidiopsis thermalis (50%)
2 1758 bp 48.41 4.78 94.54
sw_4_scaffold_33836 1 1273 bp 49.02 4.79 46.19
sw_4_scaffold_13120
Species: marine sediment metagenome (50%)
2 1357 bp 41.71 4.79 67.65
sw_4_scaffold_15907
Species: Spirosoma linguale (100%)
1 1170 bp 56.15 4.79 100.00
sw_4_scaffold_14390 4 2168 bp 43.22 4.80 101.02
sw_4_scaffold_19260 4 1001 bp 51.15 4.80 105.79
sw_4_scaffold_14969 2 1229 bp 55.41 4.80 94.71
sw_4_scaffold_4515 4 2773 bp 56.40 4.80 40.57
sw_4_scaffold_10858 3 1561 bp 36.96 4.80 79.56
sw_4_scaffold_8910
Species: Halostagnicola sp. A56 (50%)
2 1791 bp 48.19 4.80 93.30
sw_4_scaffold_23951
Species: Echinicola vietnamensis (50%)
2 1581 bp 54.84 4.81 71.35
sw_4_scaffold_15349
Species: Halorhabdus tiamatea (50%)
2 1205 bp 40.75 4.81 82.90
sw_4_scaffold_12436
Species: Candidatus Halobonum tyrrellensis (50%)
2 1414 bp 45.19 4.81 98.02
sw_4_scaffold_17572 4 1081 bp 50.23 4.81 100.46
sw_4_scaffold_16432 1 1140 bp 45.88 4.82 98.16
sw_4_scaffold_11134
Species: Cyanothece sp. PCC 7425 (50%)
2 1535 bp 36.42 4.82 96.16
sw_4_scaffold_25299 2 1493 bp 55.26 4.82 30.54
sw_4_scaffold_13344
Domain: Bacteria (66.67%)
3 1825 bp 58.30 4.82 69.70
sw_4_scaffold_18428
Species: Pontibacter sp. BAB1700 (100%)
1 1038 bp 55.68 4.82 40.46
sw_4_scaffold_22559 3 1494 bp 52.68 4.82 35.94
sw_4_scaffold_11382
Species: Scytonema tolypothrichoides (50%)
2 2112 bp 45.17 4.83 75.14
sw_4_scaffold_13565
Species: Natronomonas pharaonis (100%)
3 1324 bp 53.93 4.83 101.96
sw_4_scaffold_16837
Species: Cyanothece sp. PCC 7425 (100%)
1 1119 bp 51.92 4.83 99.73
sw_4_scaffold_14772 3 1242 bp 56.12 4.83 57.00
sw_4_scaffold_15777 2 1178 bp 41.85 4.84 100.34
sw_4_scaffold_18118
Species: marine sediment metagenome (50%)
2 1053 bp 59.92 4.84 85.47
sw_4_scaffold_5812 3 2376 bp 42.93 4.84 91.92
sw_4_scaffold_13327
Species: Cyanothece sp. PCC 8801 (50%)
2 1343 bp 39.84 4.84 88.46
sw_4_scaffold_17307 2 1094 bp 56.58 4.84 42.23
Displaying items 251-300 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.